<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22381

Description Uncharacterized protein
SequenceMDDISSSSFLGLSSAAGMEPSTKPGPSQVADVVFVIEGTANLGPYFESLRKNYILPAIEYFNGGPPAETDFGGDYGGTQYGLVVFNTVDCAPESYVQCHAPTSSAFEFVSWIDSIQFMGGGAESCSLIAEGLSVALQLFDDFKKMREQIGQTHKVCVLLCNSPPYLLPAVESVSYTGFTADNLVKIIRDRGIHFSVVAPRKLPALRALFEWASPVTGAVEPHPDYSQDPFHMVLVRGISLPVSAGGGQPHKPVLPPQPLPGSQSVVGPSQAPPPINPAHSYQNQPPLTPAQVAAQMAVDAANNQKNRFTGITGGQFQNQSISSVPGSKHGPPSLPTVTTVNQPMTQQVPPNSQQTVPPPGQLVVSQPVQPQPQPNQPPAPSAQPNIASVPPGQVNANQMGQPQGVANKVVAWTGVLEWQEKPKASSMDSTKLTRSLPCQVYVNQGENLNTDQWPQKLIMQLIPQQLLTTLGHLFRNSRMVQFLFTSKDMDSLRGLYRIMANGFAGCVHFPHTTSPCEVRVLMLLYSSKKKIFMGLIPNDQSGFVNGIRQVITNHKQVQQHRAQLGGASVSMQPNQVPTNQNFLNRPPGPIPVSHGNVQQQSVVVGMPPVSQVSIMEEQQRPSSMMTMRAAGPTNQQPPVSGAPPNQVAQGGQTQPQGSILRLPNPGANPQLRSLLLSQQQPQGGVSHMPNMMSHQALGQQMVHPAPGGGPQIQNQWRQPMSGQMLMSGGQRGPIPQPGMPQVPNITDEDVIRDLL
Length755
PositionUnknown
OrganismXiphophorus maculatus (Southern platyfish) (Platypoecilus maculatus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Cyprinodontiformes> Poeciliidae> Poeciliinae> Xiphophorus.
Aromaticity0.06
Grand average of hydropathy-0.319
Instability index50.96
Isoelectric point8.07
Molecular weight81128.44
Publications
PubMed=23542700

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22381
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     316.40|      44|      44|     627|     670|       1
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  205-  257 (41.87/ 9.00)	LRAlfewAS.PvtgaVEPH.PD..YSQ...DP.........FHM..V.LV.................RGISLPVSAGGGQPHkPVLPPQ
  263-  332 (42.32/ 9.17)	QSV....VG.P....SQAP.PP..INP...AHsyqnqppltPAQ..VaAQmavdaannqknrftgitGGQFQNQ.SISSVPG.SKHGPP
  337-  385 (52.68/13.25)	VTT....VNqP....MTQQvPP..NSQqtvPP.........PGQlvV.SQ.................PVQPQPQPN..QPPA.PSAQPN
  592-  626 (41.32/ 8.78)	VSH....GN.V....QQQS.VV..VGM...PP.........VSQ..V.SI.................MEEQQRPSSMM..........T
  627-  670 (82.86/25.12)	MRA....AG.P....TNQQ.PP..VSG...AP.........PNQ..V.AQ.................GGQTQPQGSILRLPN.PGANPQ
  671-  711 (55.35/14.30)	LRS....LL.L....SQQQ.PQggVSH...M..........PNM..M.SH.....................QALGQQMVHPA.PGGGPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     263.84|      61|     141|     392|     454|       2
---------------------------------------------------------------------------
  392-  454 (100.63/59.80)	GQVNAN.QMGQPQGVANKVVAWTGVLEWQEKPKASSMDSTKLTRslPCQVYV.....NQGENLNTDQWP
  471-  531 (71.03/36.54)	GHLFRNsRMVQFLFTSKDMDSLRGLYRIMANGFAGCVHFPHTTS..PCEVRVlmllySSKKKI......
  534-  589 (92.18/49.64)	GLIPND.QSGFVNGIRQVITNHKQVQQHRAQLGGASV.SMQ.....PNQVPT.....NQNF.LNRPPGP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22381 with Med25 domain of Kingdom Metazoa
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