<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22357

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAINIKKNFPKGATWDYPNLAEALMEQAMIGLSPNPLILSYLKYAVSSQMVSYSSVLTAISKFDDFSRELCVKSLLEIMDMFCHRLSCHGKAEECIGLCRALLVVVDWLLQGCDWYCEKLRELGPSVSTETSLRACLDRLHTLMNSTKNRALVHIARLEDQSAWNNVEQSVMKVTEGLGSIPNQALATKLEECLSLVKSIPMMLSVQCDQPVHASFPSVHAFVMLEGTMNLTGETQPLVEQLMMIKRMQKIPTSLFVLEIWKACFTGLIESPEGTEELKWTAFTFLKIPQVLLRLKKYHGDKGEDFMEDVNVAFQHLLKLTPLLDKADQRCNCDCLGMLLQECHKLGLLSEVNTSCLTEKREFAPRLKTAENANIQPNPGLILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFIKLNEFPKHISGEGSKSASVRALLFDISFLMLCHMVQTYGSEVILSDPSPSGETPFFETWLQTGMPEEGKTLNPDHPCFRPEPGKVESLVTLLNNSAEMKLVQVKWHEICLSIPAAILEVLNAWENGVLSVEAVQKITDNIKGKVCSMAICAVAWLVSHVRMLGRDEREKPQTMIRQLVTPLYGEHTLQFYNERVIIMSSIMECMCADIFQQTGATLRPPMEGQESIPYRNLLPAKDPIHMSLSKQFQTVLSKGWVDSQALHLFDSLLNMGGVFWFTNNLIKELLKETRQEWANRVVELLYSIFCLDTQQITLTLLGTIVPNLLTDSAHWHSLTDPPGKALAKLCVWCALSSYSSHPKGSFSARQRKRHREDIEDYNSLFPLDDTQPSKLMRLLSSNEDEPVALSSPADRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSIVGSKMAGPHTQFVQSFMEECVECLEQGSHGSILQFMPFTMVSELVKHPALAKPRVVLAITDLTLPLGRRVAAKAISAL
Length984
PositionTail
OrganismTakifugu rubripes (Japanese pufferfish) (Fugu rubripes)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Eupercaria> Tetraodontiformes> Tetradontoidea> Tetraodontidae> Takifugu.
Aromaticity0.07
Grand average of hydropathy-0.021
Instability index44.32
Isoelectric point6.40
Molecular weight110060.96
Publications
PubMed=21551351

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
enteric nervous system development	GO:0048484	IEA:Ensembl
interstitial cell of Cajal differentiation	GO:0061453	IEA:Ensembl
retinal cone cell development	GO:0046549	IEA:Ensembl
thymus development	GO:0048538	IEA:Ensembl









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22357
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.73|      10|      17|     913|     923|       3
---------------------------------------------------------------------------
  913-  923 (16.93/13.65)	GPHTQFVQsFM
  933-  942 (19.80/10.84)	GSHGSILQ.FM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.01|      13|      15|     504|     516|       5
---------------------------------------------------------------------------
  504-  516 (22.95/11.11)	EVILSDPSP.SGET
  520-  533 (21.06/ 9.65)	ETWLQTGMPeEGKT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.90|      48|     387|     160|     233|       6
---------------------------------------------------------------------------
  160-  208 (79.56/76.33)	DRLHTLMNSTKNRALVHI...........ARLEDQSAWNN....VEqSVMKVTEGL.GSIPNQAL
  549-  612 (62.34/26.67)	ESLVTLLNNSAEMKLVQVkwheiclsipaAILEVLNAWENgvlsVE.AVQKITDNIkGKVCSMAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.30|      17|      19|     856|     872|       8
---------------------------------------------------------------------------
  856-  872 (28.05/19.46)	LSSNEDEPVALSSPADR
  878-  894 (29.25/20.63)	LSASQLHTVNMRDPLNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     252.48|      81|     387|      30|     112|       9
---------------------------------------------------------------------------
   30-  112 (139.08/102.99)	NFPKGATWDYPNLAEALMeqAMIG..LSPNPLILSYLKYAVSSQMVSYSSVLTAISKF.....DDFSRELCVKSLL.EI.MDMFCHRLSCHG
  413-  502 (113.41/77.42)	NILKTVDADHSKSPEGLL..GVLGhmLSGKSLDLLLAAAAATGKLKSFARKFIKLNEFpkhisGEGSKSASVRALLfDIsFLMLCHMVQTYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.02|      10|      17|     239|     248|      10
---------------------------------------------------------------------------
  239-  248 (17.68/ 9.99)	PSVHAFVMLE
  259-  268 (17.34/ 9.67)	PLVEQLMMIK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22357 with Med24 domain of Kingdom Metazoa
Unable to open file!