<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22336

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAINIKKNFPKGATWDYLNLAEALMEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLTAISKFEDFSRELCVQSLLEIMDMFCHRLSCHGKAEECIGLCRALLGVVVWLMQGCAWYCERLRELGPSASTEASLRACQERLHNLMTSTKNRALVHIARLEEQGSWSSVEQAMLKVTDGLSSVPNQTLRTNLEESLSLVKGIPVMLSVQCDPPLHASFPSIHAFIMLEGTMNLTGETQPLVEQLMMIKRMQQIPAPLFVLEIWKACFTGLIESPEGTEELKWTAFTFLKIPQVLLRLKKYPQGDKGQDFMEDVNIAFQYLLKLTPLLDKADQRCNCDCLGMLLQECNKLGLLSDSNTTCLTSKRTEDREFAPRLKTAENANIQPNPGLILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFDFSLLSHSAKSASVRALLFDISFLMLCHVVQTYGSEVILSDPSPSGETPFFETWLQTCMPEEGKTLNPDHPCFRPEPGKVESLVTLLNNSSEMKLVQVKWHEICLSTPAAILEVLNAWENGVLSVEAVQKITDNIKGKVCSMAICAVAWLVAHVRMLGRDEREKPQTMIRQLVTPLYGENTLQFYNERVIIMSSIMEHMCADVFQQTAATLRPPVEGQEPIPYRNLLPAKEPIHKALSKQFQAVLRKGWVDSRALHLFESLLNMGGVFWFTNNLVKELLKETRQEWANRVVELLYSIFCLDTQQITLTLLGTILPNLLTDSAHWHSLADPPGKALAKLSVWCALSSYSSHHKGSFSARQRKRQREDIEDYNSLFPLDDTQPSKLMRLLSSNEDEPVALSSPGDRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSIVGSKMAGPHTQFVQSFMEECVECLEQGSRGSILQFMPFTMVSELVKLPALAKPKVVLAITDLTLPLGRRVAAKAISAL
Length979
PositionTail
OrganismSeriola lalandi dorsalis
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Carangaria> Carangiformes> Carangidae> Seriola.
Aromaticity0.07
Grand average of hydropathy-0.027
Instability index46.27
Isoelectric point6.45
Molecular weight109337.93
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22336
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.24|      13|      24|     342|     359|       1
---------------------------------------------------------------------------
  342-  359 (14.68/23.93)	KLTpLLDKAdqrcNCDCL
  368-  380 (23.56/12.92)	KLG.LLSDS....NTTCL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.85|      22|     194|     557|     578|       3
---------------------------------------------------------------------------
  421-  438 (26.26/16.61)	KTVDAD.HS...KSPEGLLGVL
  440-  456 (16.95/ 7.64)	HMLSGKSLDLLLAAAAA.....
  557-  578 (35.64/25.64)	KLVQVKWHEICLSTPAAILEVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     115.04|      32|      35|     171|     204|       4
---------------------------------------------------------------------------
  141-  174 (33.92/16.83)	..RLRELGPSASTEASLracqERL..HNLM.TSTKNRAL
  177-  208 (52.73/34.01)	IARLEEQGSWSSVEQAM....LKV..TDGL.SSVPNQTL
  209-  239 (28.39/ 9.90)	RTNLEESLSLVKGIPVM....LSVqcDPPLhASFP....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.47|      18|     384|      90|     112|       8
---------------------------------------------------------------------------
   95-  112 (35.42/27.09)	QSLL.EI.MDMFCHRLSCHG
  478-  497 (25.04/ 7.49)	RALLfDIsFLMLCHVVQTYG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22336 with Med24 domain of Kingdom Metazoa
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