<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22328

Description Uncharacterized protein
SequenceMADVVNVGVNLDAFSHAISGIQALRSSVSRVFESLKDGMKNRETLEGREKQFIAEFQDNLQAVNRDLNELERLSGLVGRPSESHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKLQYHAGLASSLLNQQSLKRSANQMGASAKRRPKVQPSTLVLPPQYVDDVISRIGRMFPDMTIELFRPNGTSAVLLVTLGKVLKAIVVMRSLFIDRTVVRGFNENVYNEDRKVRKLDSPKSNIGVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQSSCQRCGRFLQDGLPPTWRDFRTLEAFHDTCRM
Length309
PositionTail
OrganismSeriola lalandi dorsalis
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Carangaria> Carangiformes> Carangidae> Seriola.
Aromaticity0.07
Grand average of hydropathy-0.317
Instability index47.78
Isoelectric point9.62
Molecular weight34988.78
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22328
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     198.30|      62|     229|       6|      71|       1
---------------------------------------------------------------------------
    6-   71 (93.96/69.93)	NVGVNlDAFSHAISGIQ..ALRSSVSRVFES.LKDGMKNRETLEGREKQFIaefQDNLQAVNRDLNELE
  237-  301 (104.33/65.63)	NIGVT.DHATTALLHYQlpQMPDVVVRSFMTwLRSYIKLFQSSCQRCGRFL...QDGLPPTWRDFRTLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.97|      32|      32|     147|     178|       3
---------------------------------------------------------------------------
  147-  178 (56.67/41.95)	RPKVQPSTLVLPPQYVDDVISRIGRMFPDMTI
  182-  213 (50.30/36.47)	RPNGTSAVLLVTLGKVLKAIVVMRSLFIDRTV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22328 with Med27 domain of Kingdom Metazoa
Unable to open file!