<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22320

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWSDYQWAINIKKNFPKGATWDYLNLAEALMEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLTAISKFEDFSRELCVQSLLEIMDMFCHRLSCHGKAEECIGLCRALLGVVVWLMQGCAWYCERLRELGPSASTEASLRACQERLHNLMTSTKNRALVHIARLEEQGSWSSVEQAMLKVTDGLSSVPNQTLRTNLEESLSLVKGIPVMLSVQCDPPLHASFPSIHAFIMLEGTMNLTGETQPLVEQLMMIKRMQQIPAPLFVLEIWKACFTGLIESPEGTEELKWTAFTFLKIPQVLLRLKKYPQSDKGQDFMEDVNIAFQYLLKLTPLLDKADQRCNCDCLGMLLQECNKLGLLSDSNTTCLTSKRTEDREFAPRLKTAENANIQPNPGLILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFDFSLLSHSAKSASVRALLFDISFLMLCHVVQTYGSEVILSDPSPSGETPFFETWLQTCMPEEGKTLNPDHPCFRPEPGKVESLVTLLNNSSEMKLVQVKWHEICLSTPAAILEVLNAWENGVLSVEAVQKITDNIKGKVCSMAICAVAWLVAHVRMLGRDEREKPQTMIRQLVTPLYGENTLQFYNERVIIMSSIMEHMCADVFQQTAATLRPPVEGQEPIPYRNLLPAKEPIHKALSKQFQAVLRKGWVDSRALHLFESLLNMGGVFWFTNNLVKELLKETRQEWANRVVELLYSIFCLDTQQITLTLLGTILPNLLTDSAHWHSLADPPGKALAKLSVWCALSSYSSHHKGSFSARQRKRQREDIEDYNSLFPLDDTQPSKLMRLLSSNEDEPVALSSPGDRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSIVGSKMAGPHTQFVQSFMEECVECLEQGSRGSILQFMPFTMVSELVKLPALAKPKVVLAITDLTLPLGRRVAAKAISAL
Length979
PositionTail
OrganismSeriola dumerili (Greater amberjack) (Caranx dumerili)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Carangaria> Carangiformes> Carangidae> Seriola.
Aromaticity0.07
Grand average of hydropathy-0.027
Instability index46.72
Isoelectric point6.45
Molecular weight109367.96
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22320
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.39|      14|      18|     140|     153|       2
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  140-  153 (23.87/13.77)	ERLRELGPSASTEA
  160-  173 (22.54/12.60)	ERLHNLMTSTKNRA
  178-  190 (16.97/ 7.68)	ARLEEQGSWSSVE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.86|      16|      97|     786|     801|       7
---------------------------------------------------------------------------
  786-  801 (30.37/21.44)	HWHSLADPPGKALAKL
  879-  894 (28.49/19.62)	HTVNMRDPLNRVLANL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.85|      16|      25|     394|     409|       9
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  394-  409 (27.33/17.51)	LKTAENANIQPNPGLI
  420-  435 (26.52/16.77)	LKTVDADHSKSPEGLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.47|      18|     384|      90|     112|      13
---------------------------------------------------------------------------
   95-  112 (35.42/30.82)	QSLL.EI.MDMFCHRLSCHG
  478-  497 (25.04/ 8.62)	RALLfDIsFLMLCHVVQTYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.14|      16|      34|     709|     725|      16
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  709-  725 (23.88/20.07)	RKGWVDsRALHLFESLL
  746-  761 (28.26/18.53)	RQEWAN.RVVELLYSIF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.40|      20|     672|     263|     282|      17
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  263-  282 (36.90/25.63)	QLM...MIKRMQQIPA...PLFVLEI
  935-  960 (24.50/14.46)	QFMpftMVSELVKLPAlakPKVVLAI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22320 with Med24 domain of Kingdom Metazoa
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