<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22315

Description Uncharacterized protein
SequenceMKMVNLKQAILQAWKDRWSDYQWAINIKKNFPKGVTWDYLNLAEALMEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLMAISKFDDFSRELCVKSLLEIMDMFCHRLSCHGKTEECIGLCRALLAVVVWLLQGCAWYCEKLRELGPSASTETSLGACQERLQSLMNSTKNRALVHIARLEDQGIEVCVGICLHTGLCSVIPLMLSEQSDPPVYASFPSVHAFIMLEGTMNLTGEIQPLVEQLMMIKRMQRIPAPLFVLEIWKACFTGLIESPEGTEELKWTAFTFLKVRSTSTRKTWSSLFMFTCIYQVQRCSNFFFIFSPFASLRSCDCLGMLLTECNKLGLLSDSNTVNLTSKRTEDREFAPRLKTAENANIQPNPGLILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINGILTLWMFSSFPLAKSASVRALLFDISFLMLCHVVQTYGSEVILSDPSPSGETPFFETWLQTCMPEEGKTLNPENPCFRPEPGKVESLVTLLNNSSEMKLVQVKWHEICLSIPAAILEVLNAWENGVLSVEAVQKITDNIKGKVCSMAICAVAWLVAHVRMLGRDEREKPQTMIRQLVTPLYGENTLQFYNERVIIMSSIMEHMCADVFQQTGATLRSPVEGQEPIPYRNLLPPKEPIHTALSKQFQAVLRKGWVDSRALHLFESLLNMGGVFWFTNNLVKELLKETRQEWANRVVELLYSIFCLDTQQITLTLLGTILPNLLTDSAHWRSLADPPGKALAKLSVWCALSSYSSHHKGSLSARQRKRQREDIEDYNSLFPLDDTQPSKLMRLLSSNEDEPVALSSPGDRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSILGSKMAGPHTQFVQSFMEECVECLEQGSRGSILQFMPFTMVYELVKLPALAKPKVVLAITDLTLPLGRRVAAKAISAL
Length963
PositionTail
OrganismPundamilia nyererei
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Cichlomorphae> Cichliformes> Cichlidae> African cichlids> Pseudocrenilabrinae> Haplochromini> Pundamilia.
Aromaticity0.08
Grand average of hydropathy0.060
Instability index49.41
Isoelectric point7.44
Molecular weight107770.59
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22315
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.43|      15|      17|     252|     267|       1
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  252-  267 (24.33/17.32)	IPAPLFVLEI.WKAcFT
  270-  285 (24.10/11.54)	IESPEGTEELkWTA.FT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     147.89|      50|     194|     541|     616|       3
---------------------------------------------------------------------------
   90-  146 (83.33/52.53)	RELCVK...SLLEIMDMFCH.RLSCHG..KTEECI.G.LCRALLAVVVWLLQgcawyceKLRELG
  548-  605 (64.56/89.74)	HEICLSipaAILEVLNAWENgVLSVEAvqKITDNIkGkVCSMAICAVAWLVA.......HVRMLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.46|      35|     280|     197|     231|       4
---------------------------------------------------------------------------
  197-  231 (65.93/41.57)	LCSVIPLMLSE..QSDPPVYASFPSVHAFI...ML.EG.TMN
  473-  514 (49.54/29.40)	LCHVVQTYGSEviLSDPSPSGETPFFETWLqtcMPeEGkTLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.98|      17|      21|     835|     853|       5
---------------------------------------------------------------------------
  835-  851 (28.67/17.41)	LSSNEDEPVALSSPGDR
  857-  873 (29.31/11.53)	LSASQLHTVNMRDPLNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.78|      12|      21|      32|      43|       6
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   32-   43 (23.00/14.73)	PKGVTWDYLNLA
   56-   67 (21.78/13.56)	PNPLILSYLKYA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.33|      17|     142|     371|     390|       8
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  371-  390 (27.08/20.67)	ENANIQPNPGlilRAEPTVT
  516-  532 (33.26/17.93)	ENPCFRPEPG...KVESLVT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22315 with Med24 domain of Kingdom Metazoa
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