<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22312

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMELAYVCEWEKRPKSTHCPSIPLVCSWSCRNLVAFTTDLKSEDDDKNVSHMIHIIDTEHPWDVFSINSGHTEVISCLEWDQSGSRLLSADGDGQIKCWSMSDHLVNSWESVLSSSLDGDPIIALSWLHNGVKLALHVEMSGSTNFGEKFSRVKFSPSLTLFGGKPMEGWLAVTVSGLVTVSLLKPGGALLTASESLCRLRGRVALADIAFTGGGNIVVAATDGSSSSPVQFYKVVVSVVSEKCRIDTELLPSLFLRCTTDPLRREKYPAVTHLKFLTRENSEQVLLCASNQNGSIVECWSLRKEGLPVNNIFQHCSPVVGEKQPTILKWRILTTTSDLERVSAVALPKLPISISNTELKFCPGLGLALAFHDGSIQILHRLSLHTMGVFYGASSAQRPGDESAIKRQRTAGPTVHFKALQFSWTSLALAGVDNHGKLHMLRVSPSMGQVLEMNTTLRHLLFLLEYCMVTGYDWWDVLLHVQPSMVHNLVEKLHEEYMRQNQALQQVLATRIVAVKASLCKLSTATAARACDFHAKLLLIAISSTLKSLLRPHVLNTPDKSPGDRLTEICAKNTDTDIDKVMINLKTEEFVLDGPPLQSLQQLIQWVGDFVLYLLANLPNQGSMVRPGFGFMRDGASLGMLREMLVMIRIWGLLKPGCLPTFTATSDNQDSMLLLFRLLTKLWLCSRDDGAPQDPDDSLIDECCLLPSQLLVPSMDWLPVNDGVMVKLQGKHPLRLQFGKASSLPSNAPPTPLEVFNRTPGSQRMDNLRCVHMGVCPTEESKACTRCGCVTMLRSPNKTNAMKQWEQRWIKNCLCGGLWRRIPPTFT
Length826
PositionTail
OrganismPundamilia nyererei
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Cichlomorphae> Cichliformes> Cichlidae> African cichlids> Pseudocrenilabrinae> Haplochromini> Pundamilia.
Aromaticity0.07
Grand average of hydropathy-0.027
Instability index45.94
Isoelectric point7.71
Molecular weight91550.14
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22312
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.69|      56|      79|     209|     273|       1
---------------------------------------------------------------------------
  209-  270 (79.79/71.02)	AFTGGGNIVVAATDGSSSSPV.QFYKVVVSVVSEKcriDTELLPSLFLRCTTDpLrrEKYPAV
  288-  344 (94.91/54.94)	ASNQNGSIVECWSLRKEGLPVnNIFQHCSPVVGEK...QPTILKWRILTTTSD.L..ERVSAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     119.16|      32|      45|      61|      93|       2
---------------------------------------------------------------------------
   28-   46 (19.44/ 7.51)	...............SCRNLVAFTTDL.KSEDDDK
   61-   93 (54.58/40.97)	WD.VFSiNSGHTEVISCLEWDQSGSRL.LSADGDG
  108-  141 (45.14/28.52)	WEsVLS.SSLDGDPIIALSWLHNGVKLaLHVEMSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     136.16|      29|      31|     659|     687|       4
---------------------------------------------------------------------------
  626-  655 (42.91/23.14)	PGFGFMRDGASlGMLREMLVM..IRIWGLLKP
  659-  687 (48.31/26.95)	PTFTATSDNQD.SMLLLFRLL..TKLWLCSRD
  691-  721 (44.94/24.57)	PQDPDDSLIDE.CCLLPSQLLvpSMDWLPVND
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22312 with Med16 domain of Kingdom Metazoa
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