<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22289

Description Uncharacterized protein
SequenceMSEPISVGVNLDAFSHAISGIQALRSSVSRVFESLKDGMKNRETLEGREKRFISEFQDTLQAVNRDLNELERLSGLVGRPSESHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKLQYHAGLASSLLNQQSLKRSANQMGASAKRRPKVQPSTLVLPPQYVDDVISRVGRMFPDMTIELFRPNGTSAVLLVTLGKVLKAIVVMRSLFIDRTVVRGFNENVYSEDGKVRLTWAVKTDLPLSLLHYQLPQMPDVVVRSFMTWLRSYIKLFQSSCQRCGRFLQDGLPPTWRDFRTLEAFHDTCRL
Length303
PositionTail
OrganismPoecilia mexicana
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Cyprinodontiformes> Poeciliidae> Poeciliinae> Poecilia.
Aromaticity0.08
Grand average of hydropathy-0.262
Instability index48.71
Isoelectric point9.65
Molecular weight34365.18
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22289
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.85|      30|      30|      83|     112|       1
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   83-  112 (51.09/34.32)	SHPLH.NSGLL.SLDPVQDKTPLYSQLLQAYK
  114-  145 (36.76/22.74)	SNKLQyHAGLAsSLLNQQSLKRSANQMGASAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.94|      33|      33|     155|     187|       2
---------------------------------------------------------------------------
  147-  181 (53.40/35.44)	RPKVQPstLVLPPQYVDDVISRVGRMFPDMTI.ELF
  182-  217 (44.54/28.45)	RPNGTSavLLVTLGKVLKAIVVMRSLFIDRTVvRGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      62.57|      12|     239|      48|      59|       4
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   48-   59 (22.06/14.34)	REKRFISEFQDT
  275-  283 (18.57/11.08)	RCGRFL...QDG
  289-  300 (21.93/14.22)	RDFRTLEAFHDT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22289 with Med27 domain of Kingdom Metazoa
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