Description | "Transcription elongation factor A (SII), 1" |
Sequence | MSKKEEEEIIRIAKKMDKMAQKKNGAGALDLLKELRNIPMSLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDEPGGGDKASEEKRKEQTTPVVSPSQGSPEAKEESSSSSNFSSRSDTTEVAPNSLIHNFPRAPSTSDSIRLKCREMLANALQTGEDYIAIGADCEELGAQIEECIFQEFKNTDMKYKNRVRSRISNLKDMKNPNLRRTVLCGSVSPERMAKMTAEEMASDELKEMRKNLTKEAVRDHQMATTGGTQTDLFTCGKCKGKCCTYTQVQTRSADEPMTTFVFCNQCGNRWKFC |
Length | 311 |
Position | Unknown |
Organism | Oryzias latipes (Japanese rice fish) (Japanese killifish) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Beloniformes> Adrianichthyidae> Oryziinae> Oryzias. |
Aromaticity | 0.04 |
Grand average of hydropathy | -0.743 |
Instability index | 61.15 |
Isoelectric point | 8.55 |
Molecular weight | 34796.31 |
Publications | PubMed=17554307 |
Annotated function |
|
GO - Cellular Component | nucleus GO:0005634 IEA:UniProtKB-SubCell |
GO - Biological Function | nucleic acid binding GO:0003676 IEA:InterPro zinc ion binding GO:0008270 IEA:InterPro |
GO - Biological Process | positive regulation of transcription by RNA polymerase II GO:0045944 IBA:GO_Central transcription, DNA-templated GO:0006351 IEA:InterPro |
Binary Interactions |
Repeats | >MDP22263 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 63.66| 20| 209| 14| 36| 1 --------------------------------------------------------------------------- 14- 36 (28.67/21.45) KKMDKMAQKKngaGALDLLKELR 228- 247 (34.99/18.36) ERMAKMTAEE...MASDELKEMR --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 76.50| 25| 60| 61| 88| 2 --------------------------------------------------------------------------- 61- 88 (37.80/35.65) STDEEVTSLA.KSLIKSWKKlldEPGGGD 123- 148 (38.71/27.37) SSRSDTTEVApNSLIHNFPR...APSTSD --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) EEIIRIAKKMDKMA 2) LAKSLIKSWKKLL | 7 69 | 20 81 |
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