<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22251
Description |
Mediator of RNA polymerase II transcription subunit 8 |
Sequence | SVRASLLVLFVFQQREEKQLETAVESLISRVAHVKNALSSFIYKLENEYERLTWPSVLDNFALLSGQLNTINKLLRNEKTPAFRSQVIIPLLLSPDRDEDLAKLTEQRVPVFSHEIVPDHLRTKPDPEVEEQEKQLSAEAVRIGPELAQKHIQALNKLCSNLLEKLNNPREDREGDASAVRQNKASFNPTDTSALVAAVAFGKGLSKCRPPGPVAPGHPGQGPMMSGGPTLQQVTIGGGSNQQAGMGGPGAPQQQGQPGKMPSSIKTNIKSASGSIHPYNR |
Length | 281 |
Position | Head |
Organism | Oryzias latipes (Japanese rice fish) (Japanese killifish) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi>
Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata>
Ovalentaria> Atherinomorphae> Beloniformes> Adrianichthyidae> Oryziinae>
Oryzias.
|
Aromaticity | 0.04 |
Grand average of hydropathy | -0.483 |
Instability index | 44.08 |
Isoelectric point | 8.81 |
Molecular weight | 30573.36 |
Publications | PubMed=17554307
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364144
|
GO - Cellular Component | core mediator complex GO:0070847 IBA:GO_Central
mediator complex GO:0016592 IBA:GO_Central
|
GO - Biological Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000978 IBA:GO_Central
transcription coregulator activity GO:0003712 IBA:GO_Central
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IBA:GO_Central
|
Interaction
Repeat regions
Repeats |
>MDP22251
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 112.24| 33| 38| 186| 223| 1
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186- 223 (56.17/33.67) SFNPTdtsAlvAAVAFGKGLS.KCRPPGPVAP...GHPGQGP
226- 262 (56.07/23.99) SGGPT...L..QQVTIGGGSNqQAGMGGPGAPqqqGQPGKMP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 66.47| 21| 29| 81| 109| 2
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75- 96 (32.86/38.32) LRNEKTPAFrSQVIIP..LLLSPD
104- 126 (33.61/16.63) LTEQRVPVF.SHEIVPdhLRTKPD
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