<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22245

Description Uncharacterized protein
SequenceMEPPSKPGSNQVADVVFVIEGTANLGPYFESLRKNYILPAIEYFNGGPPAETDFGGDYGGTQYGLVVFNTVDCAPESYVQCHAPTSSAYEFVSWIDSIQFMGGGAESCSLIAEGLSVALQLFDDFKKMREQIGQTHKVCVLLCNSPPYLLPAVESVSYTGCTAESLAKIIRDRGIHFSVVAPRKLPALRSLFERASPLNGAVEPLPDYSQDPFHMVLIRGISLPGEKPHRGRRLCTSLTRQSFCNLMRICPFVQAVCVRQSYPSCFYILNIYKQQPPHLEVKVFCFLKESLFSCCPPAHVSQPKMNPPNISAGPTQAVPPMPHQVPPNQLVPPPGQPTLSQQPQAPLQQQQSANQPTAPSGQPNMVKEDKPVSQNVFNVHFFCFFFPQKPKASSMDSATKLTRSLPCQVHVNQGENLNTEQWPQKLIMQLIPQQLLTTLGPLFRNSRMVQFLFTNKDLDSLRGLYRIMANGFAGCVHFPHTTSPCEVRVLMLLYSSKKKIFMGLIPNDQSGFVNGIRQVITNHKQVQQHRAPGQVPPNQNFLNRAPGPIPVSHGNVQTAGPTNQQSAVSGAPPNQMVQNTQAQPQGPILRLSTPGANPQLRSLLLSQQQPQGGVPHMQGMMSHQGLGQQLVHQAPGGGAQMQGQWRQPMPGQQTAVTTGRRGPVPQTGMQQVSSAMEDDLLMDLI
Length685
PositionUnknown
OrganismOryzias latipes (Japanese rice fish) (Japanese killifish)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Beloniformes> Adrianichthyidae> Oryziinae> Oryzias.
Aromaticity0.07
Grand average of hydropathy-0.293
Instability index52.97
Isoelectric point8.85
Molecular weight75146.43
Publications
PubMed=17554307

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22245
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     183.28|      23|      23|     607|     629|       1
---------------------------------------------------------------------------
  314-  337 (28.94/ 8.82)	...PTQAVPPMPHQVPPnqlvPPPGQ.P
  529-  550 (33.34/11.36)	HRAPGQ.VPPNQNFLNR....A.PGPiP
  581-  599 (32.16/10.67)	QAQPQG..PILR..LST....PGANP.Q
  607-  629 (45.15/18.18)	QQQPQGGVPHMQGMMSH....QGLGQ.Q
  632-  653 (43.68/17.33)	HQAPGGG.AQMQGQWRQ....PMPGQ.Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.42|      27|      97|     270|     298|       2
---------------------------------------------------------------------------
  253-  279 (51.70/28.20)	VQAVC.VRQSYPSCFYILNIY..KQQPPHL
  281-  310 (42.72/22.75)	VKVFCfLKESLFSCCPPAHVSqpKMNPPNI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.01|      41|      76|     406|     450|       3
---------------------------------------------------------------------------
  406-  450 (63.12/50.22)	PCQVHVNQgeNLNTEQwpQKLIMQLIPQQ...LLTTLGPLFRNSRMVQ
  484-  527 (66.89/39.12)	PCEVRVLM..LLYSSK..KKIFMGLIPNDqsgFVNGIRQVITNHKQVQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22245 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PKMNPPNISAGPTQAVPPMPHQVPPNQLVPPPGQPTLSQQPQAPLQQQQSANQPTAPSGQPNMVKED
2) TNHKQVQQHRAPGQVPPNQNFLNRAPGPIPVSHGNVQTAGPTNQQSAVSGAPPNQMVQNTQAQPQGPILRLSTPGANPQLRSLLLSQQQPQGGVPHMQGMMSHQGLGQQLVHQAPGGGAQMQGQWRQPMPGQQTAVTTGRRGPVPQTGMQQVSSAMEDDL
303
521
369
680










Molecular Recognition Features






MoRF SequenceStartStop




NANANA