<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22239

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWTDYQWAVNIKKNFPKGATWDYLNLAEALMEQAMIGPSPNPLILSYLKYAISSQMVSYASVLTAISKFDDFSRDLCVKSLLDIIDMFCCRLSCHGKAEECIGLCRALLGVVVWLLQACAWYCENLRELGPVPSIEAILRTCQERLHTLMKSTKNRALVHIARLEDQGSWNNVEQAVIKVTEGLGNVPNQTLRTSLEESLFLVKSIPSMLSVQCELPVRASFPSVHAFIMLEATMNLIGEIQPLVEQLMMIKRMQKIPTPPFVLEIWKACFTGLIESPEGTEELKWTAFTFLKIPQVLLRLKKYPQGDQGQDFMDDVNVAFQYLLKLTPLLDKADQRCTCDCLSMLLQECNKLGLLSDSNTASLTAKRESAPKLKTGDNANKQPNPVLILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFIKLNEFPKHISGEGSKSASVRALLFDISFLMLCHVVQTYGSEVVLSEPSPLGETPFFETWLQTCMPEEGKTLNPDHPCFRPEPGKVESLVTLLNNSSEMKLVQVKWHEICISIPAAILEILNAWENGLLSVEAVQKITDNIKGKVCSMAICAVAWLVAHVRMLGRDEREKPQTMIRQLITPLYAENTLQFYSERVTIMSSIMEHMCADVFQQMGAALRPPVESQEQIPYRNLLPAKEPIRKALSSQFQTVLRKGWVDSQALHLFEGLLNMGGVFWFTNNLIKELLKETRREWANRAVELLYSIFCLDTQQITLTLLGTILPNLLTDSAHWHSLSDPPGKALAKLSVWCALSSYSSHHKGPLSARQRKRQKEDIEDYNSLFPLEDTQPSKLMRLLSSNEDEPVTLSSPGDRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSIVGSKMAGPHTQFVQSFIEECVECLEQGSRGSILQFMPFTMVSELVKLPALANPKVVLAITDLTLPLGRRVAAKAISAL
Length985
PositionTail
OrganismOryzias latipes (Japanese rice fish) (Japanese killifish)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Beloniformes> Adrianichthyidae> Oryziinae> Oryzias.
Aromaticity0.07
Grand average of hydropathy0.001
Instability index47.24
Isoelectric point7.22
Molecular weight110036.15
Publications
PubMed=17554307

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
enteric nervous system development	GO:0048484	IEA:Ensembl
interstitial cell of Cajal differentiation	GO:0061453	IEA:Ensembl
retinal cone cell development	GO:0046549	IEA:Ensembl
thymus development	GO:0048538	IEA:Ensembl









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22239
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.96|      26|     115|     417|     442|       1
---------------------------------------------------------------------------
  417-  442 (45.57/27.06)	KTVDADHSK.SPE.GLLGVLGHMLSGKS
  533-  560 (38.40/21.72)	KTLNPDHPCfRPEpGKVESLVTLLNNSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.79|      13|      17|     273|     288|       2
---------------------------------------------------------------------------
  273-  285 (24.17/10.29)	IPTPPFVLEI.WKA
  291-  304 (17.62/12.01)	IESPEGTEELkWTA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     214.07|      68|     570|      10|     242|       3
---------------------------------------------------------------------------
   81-  158 (107.49/278.17)	AISKFDDFSRDLcVKslldiIDMFCCRLSCHGKAEECIglcRALLGVVVWLLqAC...AWYCEN..LRE...LGPVPSIEAILRTC
  452-  527 (106.58/16.01)	ATGKLKSFARKF.IK.....LNEFPKHISGEGSKSASV...RALLFDISFLM.LChvvQTYGSEvvLSEpspLGETPFFETWLQTC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.92|      14|     577|     226|     242|       5
---------------------------------------------------------------------------
  226-  242 (21.94/16.89)	LSVQCELpvrASFPSVH
  807-  820 (28.99/14.01)	LSVWCAL...SSYSSHH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.23|      21|      34|     673|     696|       7
---------------------------------------------------------------------------
  673-  696 (33.20/27.30)	FQqmgAALRPP.VESQEQIPYRNLL
  710-  731 (32.03/17.65)	FQ...TVLRKGwVDSQALHLFEGLL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22239 with Med24 domain of Kingdom Metazoa
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