<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22232

Description Uncharacterized protein
SequenceMRRSEENNGGKMADVVNVGVNLDAFSHAISGIQALRSSVTRVFESLKDGMKNRETLEGREKEFLAEFQDNLQAVNRDLNELERLSGLVGRPSESHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKLQYHAGLASSLLNQQSLKRSANQIGASAKRRPKVQPSTLVLPPQYVDDVISRIGRMFPDMSIELFRPNGTSAVLLVTLGKVLKAIVVMRSLFIDRTVVRGYNENVYNEDGKLDIWTKSQYQVFQKVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYSKLFQASCQRCGHFLQDGLPPTWRDFRTLEAFHDTCRM
Length322
PositionTail
OrganismOryzias melastigma (Marine medaka)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Beloniformes> Adrianichthyidae> Oryziinae> Oryzias.
Aromaticity0.08
Grand average of hydropathy-0.385
Instability index45.56
Isoelectric point9.28
Molecular weight36557.33
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
retinal cone cell development	GO:0046549	IEA:Ensembl









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22232
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.94|      45|      46|       1|      45|       1
---------------------------------------------------------------------------
    1-   45 (72.98/43.51)	MRRSEENNGGKMADVVNVGVNLDAFSHAISGIQALRSSVTRVFES
   50-   94 (72.96/43.49)	MKNRETLEGREKEFLAEFQDNLQAVNRDLNELERLSGLVGRPSES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.76|      29|      32|     158|     186|       2
---------------------------------------------------------------------------
  158-  186 (51.31/36.85)	RPKVQPSTLVLPPQYVDDVISRIGRMFPD
  193-  221 (45.45/31.88)	RPNGTSAVLLVTLGKVLKAIVVMRSLFID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.69|      14|      25|     279|     293|       3
---------------------------------------------------------------------------
  279-  293 (23.77/22.08)	TWlRSYSKL..FQASCQ
  306-  321 (24.92/17.40)	TW.RDFRTLeaFHDTCR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22232 with Med27 domain of Kingdom Metazoa
Unable to open file!