<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22231

Description Uncharacterized protein
SequenceMKVVNLKQAILQAWKERWTDYQWAVNIKKNFPKGATWDYLNLAEALMEQALIGPSPNPLILSYLKYAISSQMVSYASVLTAISKFHDFSRDLCVKSLLDIMDMFCGRLSCHGKAEECIGLCRALLGVVVWLLQACAWYCENLRELGPAPNIEAILRTCQERLQTLMNSTKNRALVHIARLEDQGSWSNVEQAMLKVTEGLGNVPNQTLRTSLEESLFLVKSIPSMLSVQCELPVRASFPSVHAFIMLEATMNLIGEIQPLVEQLMMIKRMQKIPTPLFVLEIWKACFTGLIESPEGTEELKWTAFTFLKIPQVLLRLKKYPQGDQGQDFMDDVNVAFQYLLKLTPLLDKADQRCTCDCLSMLLQECNKLGLLSDSNTTSLTSKRESAPRLKTGDNANKQPNPVLILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFIKLNEFPKHISGEGSKSASVRALLFDISFLMLCHVVQTYGSEVVLSEPSPMGETPFFETWLQTCMPEEGKTLNPDHPCFRPEPGKVESLVTLLNNSSEMRLVQVKWHEICISIPAAILEILNAWEKGLLSVEAVQNITDNIKGKVCSMAICAVAWLVAHVRMLGRDEREKPQTMIRQLITPLYAENTLQFYSERVTIMSSIMEHMCADVFQQMGAALRPPVESQEQIPYRNLLPAKEPIRKALSSQFQTVLRKGWVDSQALHLFEGLLNMGGVFWFTNNLIKELLKETRREWANRAVELLYSIFCLDTQQITLTLLGTILPNLMTDSAHWHSLSDPPGKALAKLSVWCALSSYSSHHRGPLSARQRKRQKEDIEDYNSLFPLDDTQPSKLMRLLSSNEDEPVTLSSPGDRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSIVGSKMAGPHTQFVQSFIQECVECLEQGSRGSILQFMPFTMVSELVKLPALANPKVVLAITDLTLPLGRRVAAKAISAL
Length985
PositionTail
OrganismOryzias melastigma (Marine medaka)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Neoteleostei> Acanthomorphata> Ovalentaria> Atherinomorphae> Beloniformes> Adrianichthyidae> Oryziinae> Oryzias.
Aromaticity0.07
Grand average of hydropathy-0.013
Instability index46.75
Isoelectric point7.47
Molecular weight110160.22
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
enteric nervous system development	GO:0048484	IEA:Ensembl
interstitial cell of Cajal differentiation	GO:0061453	IEA:Ensembl
retinal cone cell development	GO:0046549	IEA:Ensembl
thymus development	GO:0048538	IEA:Ensembl









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22231
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     164.60|      52|     171|     163|     215|       2
---------------------------------------------------------------------------
  146-  200 (80.52/64.78)	GPAPNieAILRTCQERLQTLMNSTKNRALVHiARLEDQGSWSNVEQ.AMLKVTEGL
  201-  253 (84.08/62.69)	GNVPN..QTLRTSLEESLFLVKSIPSMLSVQ.CELPVRASFPSVHAfIMLEATMNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.96|      26|     115|     417|     442|       3
---------------------------------------------------------------------------
  417-  442 (45.57/24.40)	KTVDADHSK.SPE.GLLGVLGHMLSGKS
  533-  560 (38.40/19.57)	KTLNPDHPCfRPEpGKVESLVTLLNNSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     165.74|      53|      90|     770|     823|       5
---------------------------------------------------------------------------
  770-  823 (91.57/76.88)	DTQQIT..LTLLG...............TILPNLMTDSAHWHSLSDPPGKALAKLSVWCAlSSYSSHHRGP
  846-  915 (74.17/56.29)	DDTQPSklMRLLSsnedepvtlsspgdrSMSSSLSASQLHTVNMRDPLNRVLANLFLLIS.SIVGSKMAGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     197.12|      66|     388|      67|     135|       7
---------------------------------------------------------------------------
   67-  135 (106.04/77.80)	AISSQMVSYASVLTAISKF..H...DFSRDLCVKSLL.DI.MDMFCGRLSCHGkAEECIGLCRAlLGVV....VWlLQAC
  451-  527 (91.08/55.28)	AATGKLKSFARKFIKLNEFpkHisgEGSKSASVRALLfDIsFLMLCHVVQTYG.SEVVLSEPSP.MGETpffeTW.LQTC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.50|      10|      34|     272|     281|       8
---------------------------------------------------------------------------
  272-  281 (18.35/10.31)	KIPTPLFVLE
  309-  318 (17.15/ 9.16)	KIPQVLLRLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.06|      24|     570|      10|      34|      10
---------------------------------------------------------------------------
   10-   34 (42.11/31.15)	ILQAWKERWTDYQWAVNIKKNFpKG
  583-  606 (40.95/24.81)	ILNAWEKGLLSVEAVQNITDNI.KG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22231 with Med24 domain of Kingdom Metazoa
Unable to open file!