<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22218

Description Mediator complex subunit 26
SequenceMTTASATPQQMRDRLLQAIDSHSNIRNMVAVLDVISHLEKYPITKEALEETRLGKLINDVRKKTKDEDLAKRAKKLLRNWQKLIEPSQSDTPSRGVQGGPGSANGGSHPCRTDVPVPPPAKVAPELKTRNDIHNTFSPLAEKSRSRKHRDQRDSPNLPSKVYKTQSNVFSSPLPSNGIGGNPEPLTEKQDDAPSDRNRPEPLETDRQNKIPVNAVKPHPSSPGLTKLPSTSSLLKTSVLKQLIVDGAEKPQPSSSPQYSLSPRLVKQETVAKRSSAYAPKATLLSPSQNSAQVPSLLPLTSPTQVSCADGPGPGPLPLEVEDSFPLHRPAERTTHEPSDVQNALPEVTKDSSERVTSNKKRKKYRSRDYTVNLQGQPSEDQTKPVRLKERRLTFDPVTGQIKPLTPKESLPEEECQGPPAFEPARTEVPTQRPSVTAPSPFQQTNWKELSRNEIIQSYLSLQSNVLTSSGAQTHGAHFFMTEYLKREEHDVRETRKTHVLVPCGSGSELPGVSREVTLEDLSRIHSERWPGVNGCFDTKGEWFDWTECISLDTHGDESRLNILPYVCLD
Length569
PositionUnknown
OrganismAstyanax mexicanus (Blind cave fish) (Astyanax fasciatus mexicanus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Ostariophysi> Characiformes> Characoidei> Characidae> Astyanax.
Aromaticity0.04
Grand average of hydropathy-0.846
Instability index66.05
Isoelectric point8.74
Molecular weight63085.06
Publications
PubMed=25329095

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22218
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     106.31|      30|      32|     233|     264|       1
---------------------------------------------------------------------------
  198-  224 (36.76/17.08)	RpepLETDRQNKIPVN.AVKPH..PSS........PGL
  233-  264 (47.69/29.62)	L...LKTSVLKQLIVDGAEKPQ..PSSSP.QYSlsPRL
  283-  306 (21.86/ 6.60)	L...LSPS......QNSAQVPSllPLTSPtQVS.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     280.02|      95|     218|      99|     195|       2
---------------------------------------------------------------------------
   79-  143 (71.51/31.13)	.........................................NWQKLIEpSQSDTPS..................................................................................................................RgvqgGPGSANGGSHPCRTD....VPVPPPAKVAPELKTrnDIHNTFSPLAEKS
  144-  194 (70.29/26.04)	RSRKHRDQRD.SPNL...PSKVYKTQSNVFSSPLPSNGIGGNPEPLTE.KQDDAPS........................................................................................................................................................................
  309-  351 (38.58/11.22)	........................................................drnrpepletdrqnkipvnavkphpsspgltklpstssllktsvlkqlivdgaekpqpssspqyslsprlvkqetvakrssayapkatllspsqnsaqvpsllpltsptqvscaD....GPGP...GPLPLE..vedsFPLHRPAERTTHEPS..DVQNALPEVTKDS
  359-  438 (99.64/40.11)	KKRKKYRSRDyTVNLqgqPSEDQTKPVRLKERRLTFDPVTGQIKPLTP.KES........................................................................................................................lpeEECQGPPAFEPARTE....VPTQRPSVTAP...................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22218 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KLLRNWQKLIEPSQSDTPSRGVQGGPGSANGGSHPCRTDVPVPPPAKVAPELKTRNDIHNTFSPLAEKSRSRKHRDQRDSPNLPSKVYKTQSNVFSSPLPSNGIGGNPEPLTEKQDDAPSDRNRPEPLETDRQNKIPVNAVKPHPSSPGLTKLPSTSS
2) KTSVLKQLIVDGAEKPQPSSSPQYSLSPRLVKQETVAKRSSAYAPKATLLSPSQNSAQVPSLLPLTSPTQVSCADGPGPGPLPLEVEDSFPLHRPAERTTHEPSDVQNALPEVTKDSSERVTSNKKRKKYRSRDYTVNLQGQPSEDQTKPVRLKERRLTFDPVTGQIKPLTPKESLPEEECQGPPAFEPARTEVPTQRPSVTAPSPFQQTNW
75
235
232
446










Molecular Recognition Features






MoRF SequenceStartStop




NANANA