<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22210

Description Uncharacterized protein
SequenceMMDRLLDLDLLIMYTTVELSEWKETVTVKKLRATVGELRSTVKKLRATVGELRSELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKNTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVGELRSTVKKLRATVIVIGLFWFNECAGHCRFLCFWTGYVINIKMFVVKKVFYILKPY
Length1122
PositionMiddle
OrganismAstyanax mexicanus (Blind cave fish) (Astyanax fasciatus mexicanus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Actinopterygii> Neopterygii> Teleostei> Ostariophysi> Characiformes> Characoidei> Characidae> Astyanax.
Aromaticity0.01
Grand average of hydropathy-0.302
Instability index47.87
Isoelectric point11.86
Molecular weight124221.08
Publications
PubMed=25329095

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:InterPro

GO - Biological Function
GO - Biological Process
signal transduction	GO:0007165	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22210
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            38|    2328.91|      26|      26|      62|      87|       1
---------------------------------------------------------------------------
   30-   50 (48.69/18.20)	.......KLRATVGELRSTVKKLRATVG
   55-   82 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
   83-  110 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  111-  138 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  139-  166 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  167-  194 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  195-  222 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  223-  250 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  251-  278 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  279-  306 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  307-  334 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  335-  362 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  363-  390 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  391-  418 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  419-  446 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  447-  474 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  475-  502 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  503-  530 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  531-  558 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  559-  586 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  587-  614 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  615-  642 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  643-  670 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  671-  698 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  699-  726 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  727-  754 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  755-  782 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  783-  810 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  811-  838 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  839-  866 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  867-  894 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  895-  922 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  923-  950 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
  951-  970 (37.66/12.60)	ELRSTvkKLRATVGELRS.......TV.
  971-  996 (46.82/17.26)	..KNTvkKLRATVGELRSTVKKLRATVG
  997- 1024 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
 1025- 1052 (62.95/25.45)	ELRSTvkKLRATVGELRSTVKKLRATVG
 1053- 1079 (55.40/21.61)	ELRSTvkKLRATVGELRSTVKKLRATV.
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22210 with Med4 domain of Kingdom Metazoa
Unable to open file!