<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22203
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MEVVYVCEWEKRPKNNHCPSIPLVCAWSCRNLIAFTTDLKNEEDDKELSHMIHIIDTEHPWDVYSINSGHREVISCLEWDQSGSRLLSADGDGEIKCWAMKEHLVNSWESIQSSSVDGDPIVALSWLHNGVKLALHVEKSGSTNFGEKFSRVKFSPSLTLFGGKPMEGWLAVTVSGLVTVSLLKPNGALLSASESLCRLRGRVALADIAFTGGGNIVVAATDGSSSSPVQFYKVCVSVVNEKCRIDTELLPSLFMRCTTDPVRRDKYPAVTHLKFLTRENSEQVLLCASSQMGSIVECWSLRKEGLPVNNIFQHRSPVVGEKQPMILKWRILSATNDLDRVSAVALPKLPISISNTDLKVASDTKFCPGLGLALSFHDGSIQILHRLSLHTMGMFYGSSGSSQRVGDEPAIKRQRAGGPAVHFKALQFSWTSLALVGVDNHGKLHMIRVSPSMGQLLDMNTLLRHLLFLLEYCMVTGYDWWDVLLHVQPGMVHNLVEKLHEEYMRQNQALQQVLATRIVAVKASLCKLSSATAARANDFHAKLLLIAISSTLKSLLRPHVLNTPDKSPGDRLAEICTKNTDTDIDKVMINLKTEEFVLDGPPLQSLQQLIQWVGDFVLYLLANLPNQGSIVRPGFGFLRDGPSLGMLREMMVMIRIWGLLKPGCLPIYTATSDNQDSMSLLFRLLTKLWLCSRDESHPQEPDETLLDECCLLPSQLLVPSMDWLPINDGVITKIQSKHQLRLQFGKPYTLPGLNPNSQMEIFSRSPASQRMDNLRCLHMGICPTEESKACTRYKLTSLNKSALDVLQDN |
Length | 809 |
Position | Tail |
Organism | Astyanax mexicanus (Blind cave fish) (Astyanax fasciatus mexicanus) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi>
Actinopterygii> Neopterygii> Teleostei> Ostariophysi> Characiformes>
Characoidei> Characidae> Astyanax.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.074 |
Instability index | 43.55 |
Isoelectric point | 6.93 |
Molecular weight | 90070.21 |
Publications | PubMed=25329095
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | catalytic activity GO:0003824 IEA:InterPro
|
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP22203
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 155.91| 49| 198| 77| 126| 1
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77- 126 (87.66/52.36) LEWDQSGSRLLSADGD.GEI.KCWAM.KEHL.VNSWESIQSSSV.DGDPIVaLSW
276- 329 (68.26/36.46) LTRENSEQVLLCASSQmGSIvECWSLrKEGLpVNNIFQHRSPVVgEKQPMI.LKW
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 118.52| 38| 372| 338| 407| 2
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368- 407 (62.70/80.31) PGLGLaLSFHDG...SIQILHRLSLHtMGMFY...G...........SSGSSQRVGD
719- 773 (55.82/19.88) PSMDW.LPINDGvitKIQSKHQLRLQ.FGKPYtlpGlnpnsqmeifsRSPASQRMDN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 129.14| 38| 372| 170| 208| 3
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170- 208 (53.93/38.90) LAVTVSGLVTvSLLKP...NGAL........LSASESLCRLRGRVALADI
504- 537 (21.24/ 8.68) .............MRQ...NQALqqvlatriVAVKASLCKLSSATAARAN
544- 584 (53.97/34.35) LLIAISSTLK.SLLRPhvlNTPD........KSPGDRLAEICTKNTDTDI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 107.39| 29| 190| 446| 474| 4
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446- 474 (52.57/34.48) MIRVSPSMGQLLDMNTLLRHLLFLLEYCM
637- 665 (54.82/36.28) FLRDGPSLGMLREMMVMIRIWGLLKPGCL
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