<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22172

Description "WD domain, G-beta repeat"
SequenceMRQLFWLPLLGLAWAASLSPAGTLQGHHGPVAAMALSPDGQTLALAADAYIQLFGVDGRPRGLLSGHRDTVRSLSYNPEGTLLASGAADNAVWLWKPEERLALRTYQAHSGEVWGLRFSPNGRSVLSGSADGEVRLWNLGGQTLRTYAAGGWIYGLAFAPDGKHFASGGLEGVELWHTQSARPLPLLGPQGVHSLDWSPKGLLATGDREGVIRLWDLEGRPRGQIQAHSQLVSALAWNPAGQWLLSGGQDGKIAVWNEEGRPVRSWQSSSVLCVAWSPEGGVISGHDDGRARLWSAGGRLVRTLEPIAASVSALAHSPDGRYLASGGRDKEVWLWDSQGRVLHRLRGHELEVSVLAFSPDSRHLASGSADGTIRIWEVASGRPVQTLSRHDGGVSALAWHPAGRGLVSGGRDEVIKLWEWRSGKLLLDWRAHEFDVTGLAWVGENFVSASADQTIAWWNVRGQELRRVFTGQGPLYALALDPKGTVLATGGFKGSVRLWQAQSGKALHTLEGHTSAVQALAWDVSGSKLASASWDKTVRLWEVNEGTLTQTLDGFVRPVYGLAWPQSGLVVGSGTLRRGGTLSVFRAR
Length588
PositionTail
OrganismMeiothermus roseus
KingdomBacteria
LineageBacteria> Deinococcus-Thermus> Deinococci> Thermales> Thermaceae> Calidithermus.
Aromaticity0.09
Grand average of hydropathy-0.179
Instability index36.17
Isoelectric point9.29
Molecular weight63331.56
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22172
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            14|     699.17|      39|      39|     311|     349|       1
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    6-   49 (35.87/ 8.80)	...WLpllglaWA.AS.L.SP.AGTLQGHH.gpVAAMALSPDGQTLALAA.DA
   50-   90 (48.69/13.95)	YI.QL......FG.VD.G.RP.RGLLSGHR.dtVRSLSYNPEGTLLASGAADN
   91-  132 (54.35/16.23)	AV.WL......WK.PE.E.RLaLRTYQAHS.geVWGLRFSPNGRSVLSGSADG
  133-  171 (48.84/14.01)	EV.RL......WN.LG.G.QT.LRTYAAGG..wIYGLAFAPDGKHFASGGLE.
  172-  210 (51.17/14.95)	GV.EL......WH.TQ.SaRP.LPLLGPQG...VHSLDWSPKG.LLATGDREG
  211-  251 (62.91/19.67)	VI.RL......WD.LE.G.RP.RGQIQAHS.qlVSALAWNPAGQWLLSGGQDG
  252-  289 (45.90/12.83)	KI.AV......WN.EE.G.R....PVRSWQsssVLCVAWSPEGGVI.SGHDDG
  290-  330 (57.64/17.55)	RA.RL......WS.AG.G.RL.VRTLEPIA.asVSALAHSPDGRYLASGGRDK
  331-  371 (63.39/19.86)	EV.WL......WD.SQ.G.RV.LHRLRGHE.leVSVLAFSPDSRHLASGSADG
  372-  413 (56.07/16.92)	TI.RI......WEvAS.G.RP.VQTLSRHD.ggVSALAWHPAGRGLVSGGRDE
  416-  453 (43.47/11.85)	KL.WE......WR.S..G.KL.LLDWRAHE.fdVTGLA..WVGENFVSASADQ
  454-  494 (44.84/12.40)	TIaW.......WN.VR.G.QE.LRRVFTGQ.gpLYALALDPKGTVLATGGFKG
  495-  536 (50.25/14.58)	SV.RL......WQ.AQsG.KA.LHTLEGHT.saVQALAWDVSGSKLASASWDK
  537-  574 (35.79/ 8.77)	TV.RL......WEvNE.G.TL.TQTLDGFV.rpVYGLAWPQSGLVVGSG....
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22172 with Med16 domain of Kingdom Bacteria
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