<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22160

Description Uncharacterized protein
SequenceMTQQQRMNYTGGITQNVTNIDHIEVVRSRMIQVNDAQSEFLANLSVSEDPSWINFLNKFNTFLSKHTGLSNTFIDSTLRKIMLYPKEAPPVELEQIFNTLLRTKQIPEIEILEQEIKQEISLQENLLNLELEIKKNLNDIDDDSKWDKLFDEWEKRYKEHDFIALSSSQICENIFGDINLKNRLSDSIDFDKDLHDDVENIEDLTMEKVLAFMSSGIQEGKGPSK
Length225
PositionHead
OrganismGlomus cerebriforme
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Glomeromycotina> Glomeromycetes> Glomerales> Glomeraceae> Glomus.
Aromaticity0.08
Grand average of hydropathy-0.561
Instability index55.74
Isoelectric point4.61
Molecular weight26158.15
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22160
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.31|      15|      37|      48|      63|       1
---------------------------------------------------------------------------
   48-   63 (23.05/19.33)	EDPSwINFLNKFNTFL
   87-  101 (26.25/15.33)	EAPP.VELEQIFNTLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.15|      19|      42|     136|     154|       2
---------------------------------------------------------------------------
  136-  154 (37.72/22.30)	NL.NDIDDDSKWDK.LFDEWE
  179-  199 (25.43/12.99)	NLkNRLSDSIDFDKdLHDDVE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22160 with Med8 domain of Kingdom Fungi
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