<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22125

Description Mediator of RNA polymerase II transcription subunit 19 (Fragment)
SequenceALSPYRSDISAAGLARHATPVPREETSFMMSFHPQTPQSPSQFSPATSSDPSLGSSGSAAAAGTGTTTLPTPAHSVNGSSSQPDSIMLDDSPQKRKRPLEDVGDDRELKKAHIDDYKLAIEDLHRDVGLKYLLLQSPHPESLPRTSEDLYEMFDLVNLAAEVAREKPNGEKNALRKTYKGHIKRLGVTGHFDVQKKKEDSPSDFLSMLQVPDHEWNVHQVKGRALMDGLSEVTKSTLGRALTMAKGPVAKSLWDTSVLGDIGPSNGDSSKAPSAKPTAPNTPLISMPGAAMNRPKSQLLPGQNPARPQRSIKKRSYGDSSYEGYGEGFPDDDTGLETGYSTGEGEGGQKRRKKASENRNPNYDAAGIF
Length368
PositionHead
OrganismTrichoderma arundinaceum
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Hypocreaceae> Trichoderma.
Aromaticity0.05
Grand average of hydropathy-0.793
Instability index53.85
Isoelectric point6.89
Molecular weight39692.69
Publications
PubMed=29649280

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364151
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP22125
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.91|      15|      18|     222|     238|       1
---------------------------------------------------------------------------
  222-  236 (25.90/10.47)	GRALMDGLSEVTK.....ST
  238-  257 (20.01/12.54)	GRALTMAKGPVAKslwdtSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.07|      14|      18|      96|     109|       2
---------------------------------------------------------------------------
   96-  109 (24.51/17.79)	KRPLEDVGDDRELK
  117-  130 (23.57/16.83)	KLAIEDLHRDVGLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.08|      13|      21|     185|     197|       4
---------------------------------------------------------------------------
  185-  197 (22.86/13.88)	LGVTGH.FDVQKKK
  208-  221 (21.22/12.45)	LQVPDHeWNVHQVK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22125 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSPYRSDISAAGLARHATPVPREETSFMMSFHPQTPQSPSQFSPATSSDPSLGSSGSAAAAGTGTTTLPTPAHSVNGSSSQPDSIMLDDSPQKRKRPLEDVGDDREL
2) LWDTSVLGDIGPSNGDSSKAPSAKPTAPNTPLISMPGAAMNRPKSQLLPGQNPARPQRSIKKRSYGDSSYEGYGEGFPDDDTGLETGYSTGEGEGGQKRRKKASENRNPNYDAAGIF
1
252
108
368










Molecular Recognition Features






MoRF SequenceStartStop




1) AAGIF
2) GGQKRRKKASENRNPN
3) GYGEGFP
364
346
323
368
361
329