<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22102

Description Uncharacterized protein
SequenceMATPPPMGPPGNPMFEGGGPPPPPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAMSPFYDWTCNNEQLRVRSVHPLDISNLTKMTGIEYILSEVLEPHLFVIRKQKRDSPEKVTPMLAYYILDGSIYQAPQLCNVFAARIGRTLHHIQKAFTIAASKLEKIGYVSDRKSGVLLTFVNVNLIVIPLAGSVDAENESEVLESKVSKETIDLKEVKRIDMILASLQRKLPPAPPPPPFPEGYVPPPTSETEEGTDTKEGTGTQAPTSDPIIDQGPSKRMKF
Length281
PositionHead
OrganismLupinus angustifolius (Narrow-leaved blue lupine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> genistoids sensu lato> core genistoids> Genisteae> Lupinus.
Aromaticity0.08
Grand average of hydropathy-0.335
Instability index53.11
Isoelectric point5.50
Molecular weight31174.50
Publications
PubMed=27557478

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22102
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.96|      20|     212|       9|      28|       1
---------------------------------------------------------------------------
    9-   28 (48.93/18.47)	PP......GNPMFEGGGPPPPPQPPG
  230-  241 (29.93/ 8.94)	PP..............APPPPPFPEG
  245-  269 (25.10/ 6.51)	PPtseteeGTDTKEGTGTQAPTSDP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.67|      14|      30|      35|      48|       2
---------------------------------------------------------------------------
   35-   48 (29.29/21.74)	CFRDQLWL.NTYPLD
   66-   80 (22.39/15.03)	CNNEQLRVrSVHPLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.69|      17|      30|      85|     102|       3
---------------------------------------------------------------------------
   85-  102 (26.09/21.48)	TKMTGIeYILSEVL..EPHL
  117-  135 (26.59/16.71)	TPMLAY.YILDGSIyqAPQL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22102 with Med6 domain of Kingdom Viridiplantae
Unable to open file!