<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22099

Description Uncharacterized protein
SequenceMDTTRQQPADPKNSSSTPFRLLQAGPRPREVTASTDLLSHFQLRDTYNSFSKKEFHKVTVADSGYLSRVVGETEIRRGVGMELGQLIDEPAAFTDSLHVTDLRPLDLEFLRGAFTFKENAAVFIPEAEKGLPTISGSASGKERKKRRKEKDKDKSKDKHRDKKEKDKKDKDKKEKKQKKKKKRHREEKEHGGENGEDSHRKHKKKKRREEGGGEGKEGDREKRKKKKHKHSKSGDAEDSKKNGW
Length244
PositionHead
OrganismChara braunii (Braun's stonewort)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Charophyceae> Charales> Characeae> Chara.
Aromaticity0.05
Grand average of hydropathy-1.620
Instability index39.03
Isoelectric point9.89
Molecular weight28012.15
Publications
PubMed=30007417

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22099
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.74|      19|      19|     145|     163|       1
---------------------------------------------------------------------------
  145-  163 (34.03/12.72)	KRRKEKDK..DKSKDKHRDKK
  167-  181 (22.78/ 6.03)	K....KDK..DKKEKKQKKKK
  183-  203 (25.92/ 7.90)	RHREEKEHggENGEDSHRKHK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.28|      14|      19|     204|     221|       2
---------------------------------------------------------------------------
  204-  221 (19.20/15.89)	KKKRREegggEGKEGDRE
  224-  237 (25.08/10.22)	KKKKHK....HSKSGDAE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22099 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PEAEKGLPTISGSASGKERKKRRKEKDKDKSKDKHRDKKEKDKKDKDKKEKKQKKKKKRHREEKEHGGENGEDSHRKHKKKKRREEGGGEGKEGDREKRKKKKHKHSKSGDAEDSKKNGW
125
244










Molecular Recognition Features






MoRF SequenceStartStop




1) RKKRRKEKDKDKSKDKHRDKKEKDKKDKDKKEKKQKKKKKRHREEKEHGGENGEDSHRKHKKKKRREEGGGEGKEGDREKRKKKKHKHSKSGDAEDSKKNGW
143
244