<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22097

Description Uncharacterized protein
SequenceMASGGGQGKGPDSDLAPVLQQLNIAALRSRVTELQNTVDRLVKTFFAQPNSMKWADVLGQFAIVNAQLYKLVEDMKPVMKMFLVHPKDVSAENAAILPIMLSSKLLPEMEAEQTLMTDQLLGSMAGLPPNVMEERLQLEKQMKTVCDKAEKLINDLAKAWSLKSRQGPNAGNWPRLDAVQAGRIAEQEKLIRMGMMSGEGLRLPPDQKERPAVLPSHLAPRRPLVSGGSMPDTSRVSGAVDPTGPGLPRPPLGSVGHGGPLAANSPANRTIAMSVPSGSAVSGGTPVGTPGTVQAGMMGPSVLGGASPRPGLVALSSQAGTPGHVSASGHAGTPSSVVTGVASPHVASPRIASPRIASPRPASPMQGVPMAHASPLQGVPLAHASPMQGVPMAHASPLQGVPMAHPSPLQGSYMPHPSTMHGVPMAHPSSMQGLMAHPSPMQGAIGGHASSMPVPVGHASPMQGPRSGHASPMQGPMGGHASPMQGAISGHASPMQAAIAGAYGSSYECAVEFSC
Length515
PositionHead
OrganismChara braunii (Braun's stonewort)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Charophyceae> Charales> Characeae> Chara.
Aromaticity0.02
Grand average of hydropathy-0.138
Instability index54.42
Isoelectric point9.38
Molecular weight52831.38
Publications
PubMed=30007417

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22097
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     226.96|      19|      19|     362|     380|       1
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  362-  380 (42.54/13.88)	ASPMQGVPM.AHASPLQGVP
  384-  402 (42.54/13.88)	ASPMQGVPM.AHASPLQGVP
  406-  424 (35.80/10.64)	PSPLQGSYM.PHPSTMHGVP
  428-  445 (36.69/11.07)	PSSMQGL.M.AHPSPMQGAI
  449-  466 (33.29/ 9.43)	ASSM.PVPV.GHASPMQGPR
  470-  488 (36.12/10.79)	ASPMQG.PMgGHASPMQGAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.13|      15|      19|     279|     293|       3
---------------------------------------------------------------------------
  234-  248 (24.04/ 8.19)	SRVSGAVDPTGPGLP
  279-  293 (27.94/10.84)	SAVSGGTPVGTPGTV
  301-  313 (22.16/ 6.91)	SVLGGASP..RPGLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.34|      17|      19|      91|     107|       4
---------------------------------------------------------------------------
   91-  107 (27.40/13.63)	AENAAILPIMLSSKL.LP
  111-  128 (22.94/10.38)	AEQTLMTDQLLGSMAgLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.03|      11|      21|     322|     334|       5
---------------------------------------------------------------------------
  322-  334 (13.97/12.06)	PgHVsASGHAGTP
  344-  354 (22.06/ 8.84)	P.HV.ASPRIASP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.77|      13|      43|     174|     186|       7
---------------------------------------------------------------------------
  174-  186 (21.75/ 9.28)	PRLDAVQAGRIAE
  220-  232 (23.02/10.22)	PRRPLVSGGSMPD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.87|      34|      36|      11|      46|       8
---------------------------------------------------------------------------
   11-   46 (51.46/50.23)	PDS.DLAPVLQQLNIaaLRSRVTELQNTVDRLVKTFF
   49-   83 (55.41/46.45)	PNSmKWADVLGQFAI..VNAQLYKLVEDMKPVMKMFL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22097 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MGMMSGEGLRLPPDQKERPAVLPSHLAPRRPLVSGGSMPDTSRVSGAVDPTGPGLPRPPLGSVGHGGPLAANSPANRTIAMSVPSGSAVSGGTPVGTPGTVQAGMMGPSVLGGASPRPGLVALSSQAGTPGHVSASGHAGTPSSVVTGVASPHVASPRIASPRIASPRPASPMQGVPMAHASPLQGVPLAHASPMQGVPMAHASPLQGVPMAHPSPLQGSYMPHPSTMHGVPMAHPSSMQGLMAHPSPMQGAIGGHASSMPVPVGHASPMQGPRSGHASPMQGPMGGHASPMQGAISGH
193
491










Molecular Recognition Features






MoRF SequenceStartStop




NANANA