<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22094

Description Uncharacterized protein
SequenceMDPPTGKESITSNDRRKMLMQIMASLKDHSSSLTDRQNAAARFEELTFAKAVDMQDYLRRIAQKLKTLNNAAPTASVSASNQQQGMATQVGMPGVSQMDSASFQQALNGARFQQQGIAQGQVHGQAGGLQHGMVGGMGRGLPAQFQNQTQHRQAPPGIGLLQHLPQGVIVSSGGQATAGGMMGMTGGMTTAAATLPGTANNLGGLTGVARPVGIGTPAMGMAATGHMHVAGTIGASNAMKMGLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHLQGQQMQAGQSQQLNSQSSLILRAKLKHLEQQRLQQQLQQQQQQQQQPQPQPQQQQQQSQQLQQQQQQQLQQQQLQQQQLQQQQLQQQQQQQEQQQQQQQLQQQQSQSSQQQQPQQQQQQMNQQQQQLTQEQQQQLMQQQQQLAQQQQQQQQQQQQQSQQIQQQVKGQALQMQGNPQLFQQKQSQQQQMYQAQQQRILQMQQQQQAGIRSTAVQPGMVSNGVQQPNLPAQNLQMQLNLQQQQQLQQRHAQQQQLQQQQQLQQQQQGRPGLVSGAEDGSGQSSVTSVQSFSEPERLWQKLQMLKGQHFAFLQELMSAIEAKVHQQNITSEQLKKCELERSRLHQIMLYLQLNKEKIAQSLNSNEKLTQFANNIKLLEATINRLRTRHQVRLQQQPLQQPSMQQLQLQQQQQLQQQQLQHQQLQQQQLQQKQQLQQQQLQQQQLQQQQQQQQQQQQQQQQQQQQPEHQHQHQHQQQQQALSSKSTVQQILLPSQSVLLGPGGASAGQSMVQQGLANQSGMQAVTTHAAMQQQQQQQQQLQQQSVLSSQQMIQPTSMLSNQQAMVQQVQQQQFSQLQQAQLLQPSQKQALIPPHQQPQQQQQQLQQQQQQLQQQQLQAVSVSDGTEQQMYPQPSHSGGAASSSISQQQQQQQQQQQQHQQHHQQQSQQLQQQKLQQQLQQQQQQLQHQEQQRLLQSHAQLPLVSQMSSHQVLQMQQQQQQLAQSKARQEMILNSKKRLQSSTVSKIPSPMLVSSPPPADSPQFSHASPKQSPPQTEGSSVITNTMVKGGSLSGLGGYSPPTLAAATPPTASEDTSLGNASGKMMLSGAHTLNPGAAVSPAVNDISSQLTNLAPGTVLDRATGLSPSVSGCMVDRGMPMIKDPLQRLASKVEMMTASNSVGLRSALVDISSIVGCVDRLAPSLPGSGSKSALGEDLVSATRLRMVGGKVGSGAACNTGGGNNGFGVKRATSTGSTVSGGGIGQTSFKRARKRVESVASSFVSADGMVMSADSSVEQDRLSSEGSEVCAPLPSWRTQLTALVEEEIRQVNSTLVDTAVAISEEGTEEAILEGKEGIAVTCTYTGISTQLSPLRLLVPPDYPTSSPIVWADYMAPDFSLPVQEAARGGFSRAVRCMKEPLTVEIMARAWDDCARRAVADNAACYGGGSLSTHIGVWCTAP
Length1453
PositionTail
OrganismChara braunii (Braun's stonewort)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Charophyceae> Charales> Characeae> Chara.
Aromaticity0.02
Grand average of hydropathy-0.885
Instability index88.72
Isoelectric point9.40
Molecular weight160570.09
Publications
PubMed=30007417

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22094
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     831.00|      98|      98|     243|     340|       1
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   82-  175 (92.80/ 7.87)	..QQQGMATQ.VGMPGV.....SQMDSASFQQALNGARFQQQGIAQGQvHGQAGGL..Q...............HGMVGGMGRG.LPAQF.QNQTQHRQAPpgigllQHLPQGVIVS..SggQ
  242-  339 (192.72/30.34)	GLQQQQQQQQ.QQQQQQ.....QQQQQQQQQQQQQQQQQQQQQHLQGQ.QMQAGQS..QQ..LNSQSSL...ILRAKLKHLEQQRLQQQL.QQQQQQQQQP......QPQPQQQQQQ..S..Q
  389-  447 (93.57/ 8.04)	.............QQQQ.....PQQQQQQMNQQQQQLTQEQQQ................Q..L.....M............Q.Q..QQQLaQQQQQQQQQQ......QQQSQQIQQQvkG..Q
  448-  547 (135.25/17.41)	ALQMQGNPQLfQQKQSQ.....QQQMYQAQQQRILQMQQQQQAGIRST.AVQPGMV..SN..GVQQPNLpaqNLQMQLNLQQQQQLQQRH.AQQQQLQQQQ......QLQ.QQQQGR..P...
  652-  714 (101.10/ 9.73)	KLLEATINRL.RTRHQV.....RLQQQPLQQPSMQQLQLQQQQQLQQQ.Q..............................LQHQ....QL.QQQQLQQKQ.........QLQQ.........Q
  715-  808 (126.97/15.55)	QLQQQQLQQQ.QQQQQQ.....QQQQQQQQQQQPEHQHQHQHQ..QQQ.QALSSKStvQQilLPSQ.SV...LLGPGGASAGQSMVQQGL.ANQSGMQAVT......THAAMQQ.........
  809-  886 (88.60/ 6.92)	.....QQQQQ.QQLQQQsvlssQQMIQPTSMLSNQQAMVQQVQQQQFS.QLQQAQL..LQ..PSQKQAL...IPPHQQPQQQQQQLQQQQ.QQ..............................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     190.01|      37|      37|     922|     958|       2
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  354-  388 (60.17/ 8.78)	LQ.QQQLQQQ..QLQQQQ...QQQEQQQ.QQQQLQQQQSQSS.
  922-  958 (76.15/13.89)	QQQQQQQQQQ..QQHQQH...HQQQSQQ.LQQQKLQQQLQQQQ
  959- 1001 (53.68/ 6.71)	QQLQHQEQQRllQSHAQLplvSQMSSHQvLQMQQQQQQLAQSK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     167.69|      48|      49|    1268|    1315|       3
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 1137- 1167 (23.59/11.28)	...............TGLSP.........SVSGCMVD.RGMPMIKDplqrlaSKVE....
 1268- 1294 (30.75/17.18)	...........................VESVASSFVSADGMVMSAD......SSVEQDRL
 1295- 1344 (65.89/46.11)	SSEGSEVCAPLPSWRTQLTAL..veeeIRQVNSTLVDT.AVAISEE......GT.EEAIL
 1346- 1386 (47.46/30.93)	GKEGIAVTCTYTGISTQLSPLrllvppDYPTSSPIVWADYM...................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.43|      34|      37|    1026|    1061|       4
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 1026- 1059 (63.94/34.08)	MLVSSPPPADSPQFS..HASPKQ..............SPPQTEGSSVITN
 1077- 1126 (44.49/16.87)	TLAAATPPTASEDTSlgNASGKMmlsgahtlnpgaavSPAVNDISSQLTN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.76|      30|      31|    1195|    1225|       5
---------------------------------------------------------------------------
 1195- 1225 (45.87/34.09)	APSLPGsGSKSALGEDLVSATRLRMVGGKVG
 1228- 1257 (52.90/34.89)	AACNTG.GGNNGFGVKRATSTGSTVSGGGIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.40|      22|      37|     178|     202|       6
---------------------------------------------------------------------------
  178-  202 (31.17/28.34)	AGGmMGMTGGMTTAAATlpGTANNL
  218-  239 (41.23/24.12)	AMG.MAATGHMHVAGTI..GASNAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.89|      36|      43|     549|     590|       7
---------------------------------------------------------------------------
  549-  590 (51.67/51.88)	LVSGAEDGSGQSSVTSVQ.SFSEPERlwQKLQmlkgQHFAFLQ
  592-  628 (58.22/38.19)	LMSAIEAKVHQQNITSEQlKKCELER..SRLH....QIMLYLQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22094 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGSLSGLGGYSPPTLAAATPPTASEDTSLGNASGKMMLSGAHTLN
2) GLQHGMVGGMGRGLPAQFQNQTQHRQAPPGIGLLQHLPQ
3) LLGPGGASAGQSMVQQGLANQSGMQAVTTHAAM
4) LNNAAPTASVSASNQQQGMATQVGMPGVSQMDSASFQQA
5) LQHQEQQRLLQSHAQLPLVSQMSSHQVLQMQQQQQQLAQSKARQEMILNSKKRLQSSTVSKIPSPMLVSSPPPADSPQFSHASPKQSPPQTEGSSVITNTM
6) MDPPTGKESITSNDRRKMLMQIMASLKDHSSSLTDRQNAA
7) SDGTEQQMYPQPSHSGGAASSSISQQQQQQQQQQQQHQQHHQQQSQQLQQQ
8) SSGGQATAGGMMGMTGGMTTAAATLPGTANNLGGLTGVARPVGIGTPAMGMAATGHMHVAGTIGASNAMKMGLQQQQQQQQQQQQQQQQQQQ
1064
128
774
68
961
1
898
171
1108
166
806
106
1061
40
948
262










Molecular Recognition Features






MoRF SequenceStartStop




NANANA