<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22094

Description Uncharacterized protein
SequenceMDPPTGKESITSNDRRKMLMQIMASLKDHSSSLTDRQNAAARFEELTFAKAVDMQDYLRRIAQKLKTLNNAAPTASVSASNQQQGMATQVGMPGVSQMDSASFQQALNGARFQQQGIAQGQVHGQAGGLQHGMVGGMGRGLPAQFQNQTQHRQAPPGIGLLQHLPQGVIVSSGGQATAGGMMGMTGGMTTAAATLPGTANNLGGLTGVARPVGIGTPAMGMAATGHMHVAGTIGASNAMKMGLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHLQGQQMQAGQSQQLNSQSSLILRAKLKHLEQQRLQQQLQQQQQQQQQPQPQPQQQQQQSQQLQQQQQQQLQQQQLQQQQLQQQQLQQQQQQQEQQQQQQQLQQQQSQSSQQQQPQQQQQQMNQQQQQLTQEQQQQLMQQQQQLAQQQQQQQQQQQQQSQQIQQQVKGQALQMQGNPQLFQQKQSQQQQMYQAQQQRILQMQQQQQAGIRSTAVQPGMVSNGVQQPNLPAQNLQMQLNLQQQQQLQQRHAQQQQLQQQQQLQQQQQGRPGLVSGAEDGSGQSSVTSVQSFSEPERLWQKLQMLKGQHFAFLQELMSAIEAKVHQQNITSEQLKKCELERSRLHQIMLYLQLNKEKIAQSLNSNEKLTQFANNIKLLEATINRLRTRHQVRLQQQPLQQPSMQQLQLQQQQQLQQQQLQHQQLQQQQLQQKQQLQQQQLQQQQLQQQQQQQQQQQQQQQQQQQQPEHQHQHQHQQQQQALSSKSTVQQILLPSQSVLLGPGGASAGQSMVQQGLANQSGMQAVTTHAAMQQQQQQQQQLQQQSVLSSQQMIQPTSMLSNQQAMVQQVQQQQFSQLQQAQLLQPSQKQALIPPHQQPQQQQQQLQQQQQQLQQQQLQAVSVSDGTEQQMYPQPSHSGGAASSSISQQQQQQQQQQQQHQQHHQQQSQQLQQQKLQQQLQQQQQQLQHQEQQRLLQSHAQLPLVSQMSSHQVLQMQQQQQQLAQSKARQEMILNSKKRLQSSTVSKIPSPMLVSSPPPADSPQFSHASPKQSPPQTEGSSVITNTMVKGGSLSGLGGYSPPTLAAATPPTASEDTSLGNASGKMMLSGAHTLNPGAAVSPAVNDISSQLTNLAPGTVLDRATGLSPSVSGCMVDRGMPMIKDPLQRLASKVEMMTASNSVGLRSALVDISSIVGCVDRLAPSLPGSGSKSALGEDLVSATRLRMVGGKVGSGAACNTGGGNNGFGVKRATSTGSTVSGGGIGQTSFKRARKRVESVASSFVSADGMVMSADSSVEQDRLSSEGSEVCAPLPSWRTQLTALVEEEIRQVNSTLVDTAVAISEEGTEEAILEGKEGIAVTCTYTGISTQLSPLRLLVPPDYPTSSPIVWADYMAPDFSLPVQEAARGGFSRAVRCMKEPLTVEIMARAWDDCARRAVADNAACYGGGSLSTHIGVWCTAP
Length1453
PositionTail
OrganismChara braunii (Braun's stonewort)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Charophyceae> Charales> Characeae> Chara.
Aromaticity0.02
Grand average of hydropathy-0.885
Instability index88.72
Isoelectric point9.40
Molecular weight160570.09
Publications
PubMed=30007417

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22094
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     831.00|      98|      98|     243|     340|       1
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   82-  175 (92.80/ 7.87)	..QQQGMATQ.VGMPGV.....SQMDSASFQQALNGARFQQQGIAQGQvHGQAGGL..Q...............HGMVGGMGRG.LPAQF.QNQTQHRQAPpgigllQHLPQGVIVS..SggQ
  242-  339 (192.72/30.34)	GLQQQQQQQQ.QQQQQQ.....QQQQQQQQQQQQQQQQQQQQQHLQGQ.QMQAGQS..QQ..LNSQSSL...ILRAKLKHLEQQRLQQQL.QQQQQQQQQP......QPQPQQQQQQ..S..Q
  389-  447 (93.57/ 8.04)	.............QQQQ.....PQQQQQQMNQQQQQLTQEQQQ................Q..L.....M............Q.Q..QQQLaQQQQQQQQQQ......QQQSQQIQQQvkG..Q
  448-  547 (135.25/17.41)	ALQMQGNPQLfQQKQSQ.....QQQMYQAQQQRILQMQQQQQAGIRST.AVQPGMV..SN..GVQQPNLpaqNLQMQLNLQQQQQLQQRH.AQQQQLQQQQ......QLQ.QQQQGR..P...
  652-  714 (101.10/ 9.73)	KLLEATINRL.RTRHQV.....RLQQQPLQQPSMQQLQLQQQQQLQQQ.Q..............................LQHQ....QL.QQQQLQQKQ.........QLQQ.........Q
  715-  808 (126.97/15.55)	QLQQQQLQQQ.QQQQQQ.....QQQQQQQQQQQPEHQHQHQHQ..QQQ.QALSSKStvQQilLPSQ.SV...LLGPGGASAGQSMVQQGL.ANQSGMQAVT......THAAMQQ.........
  809-  886 (88.60/ 6.92)	.....QQQQQ.QQLQQQsvlssQQMIQPTSMLSNQQAMVQQVQQQQFS.QLQQAQL..LQ..PSQKQAL...IPPHQQPQQQQQQLQQQQ.QQ..............................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     190.01|      37|      37|     922|     958|       2
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  354-  388 (60.17/ 8.78)	LQ.QQQLQQQ..QLQQQQ...QQQEQQQ.QQQQLQQQQSQSS.
  922-  958 (76.15/13.89)	QQQQQQQQQQ..QQHQQH...HQQQSQQ.LQQQKLQQQLQQQQ
  959- 1001 (53.68/ 6.71)	QQLQHQEQQRllQSHAQLplvSQMSSHQvLQMQQQQQQLAQSK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     167.69|      48|      49|    1268|    1315|       3
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 1137- 1167 (23.59/11.28)	...............TGLSP.........SVSGCMVD.RGMPMIKDplqrlaSKVE....
 1268- 1294 (30.75/17.18)	...........................VESVASSFVSADGMVMSAD......SSVEQDRL
 1295- 1344 (65.89/46.11)	SSEGSEVCAPLPSWRTQLTAL..veeeIRQVNSTLVDT.AVAISEE......GT.EEAIL
 1346- 1386 (47.46/30.93)	GKEGIAVTCTYTGISTQLSPLrllvppDYPTSSPIVWADYM...................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.43|      34|      37|    1026|    1061|       4
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 1026- 1059 (63.94/34.08)	MLVSSPPPADSPQFS..HASPKQ..............SPPQTEGSSVITN
 1077- 1126 (44.49/16.87)	TLAAATPPTASEDTSlgNASGKMmlsgahtlnpgaavSPAVNDISSQLTN
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.76|      30|      31|    1195|    1225|       5
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 1195- 1225 (45.87/34.09)	APSLPGsGSKSALGEDLVSATRLRMVGGKVG
 1228- 1257 (52.90/34.89)	AACNTG.GGNNGFGVKRATSTGSTVSGGGIG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.40|      22|      37|     178|     202|       6
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  178-  202 (31.17/28.34)	AGGmMGMTGGMTTAAATlpGTANNL
  218-  239 (41.23/24.12)	AMG.MAATGHMHVAGTI..GASNAM
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.89|      36|      43|     549|     590|       7
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  549-  590 (51.67/51.88)	LVSGAEDGSGQSSVTSVQ.SFSEPERlwQKLQmlkgQHFAFLQ
  592-  628 (58.22/38.19)	LMSAIEAKVHQQNITSEQlKKCELER..SRLH....QIMLYLQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22094 with Med15 domain of Kingdom Viridiplantae
Unable to open file!