<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22092

Description Uncharacterized protein
SequenceMGGRAIEATGGGGAGGAAGGGAGDGYGGIFVTLFGGGVGAVGAVGAVGVAGGAGGGAGGGAGGGAGGVAGGGAAGEMGRGLGAGEGARGETGRGGGGAGGGAGGGAGGETGRGLTNTRSGRGNGKGRRRSRRRCGRGSGEGLTNTRRSGRGNREGRRSRGGSSSGRRSGRSSGRRRRSGMRSGRMSGRKRRRGNGEGRRRRERKSGRRSGRSSGRGNREGVRGGRRSARGNGKGQRRSGRRSGRRSVESGGEMGRGLGAGEGARGEMGRGGRGAGEEEREKEREDERDGKRGGDSPSSTMQILAWSPLSCPRALLTMDSKGCGSVWTQPSQGGANVARAVNVWHCEYKWRQEPAILVKWLAAPSPYSWSGDTVPKTSYSERFMSMEPCTPCRWPRAGFLCFCAVTASGFLQLHWRRWPPPAFGDPWCSTQLTALVTGSGGLTGADVIVTRAGSVLVAALPANQPATVIVMELVPLIEDERARTSVGPGSFRLKLSYYLQAWQDPASQCGQSLQAGASEQRTGPPIQCVVLSSLSTFLVPSQPQEPMAMAASSTYGSDGISHDGPGGGRNVEDAAAIPEQQLVAVAFDPVEAGSSLVTATLEGKRGVKSPQPQAAWSGGNEAEKKGPGFRIEKWEIEKQNVSIHKVFGGPVGSNYTPSDVPVAMVWKMQANRWVDSSGGSEWGVRGSTRAGAGSKDREQEVSHGAADGAMAADGAAAGGEQAGQTDKEVSSGVEGAHSSVGFAKLEFSVTGAEFSLAIRGGEIHVFSRHELTYLGFLTVAATNLTPGAAFSPNGCCITTIWRDSRDESLVGSLLKIAHVPVQLHESTALGGGDEWVGGGGSGAANPGSTLEKTIGMWNRHLANRAMWSFTTDTNWWDVIISAHHCAEEGTGTLGGMTAILDEGFQALGDKEHFSLVLDRFKCSLLEGVEVQDVRALVIDMQARLLLDHVGKSLETMLLNPTALEPKMCAGTGISQPEATALHPAMITQMHSYVDTILDLLWHFLTWLRRYGDFCRGDAATAQQGGQRLAGQSAGGATSGQSGWNTDTATTGAMGVGGGANGTAGTMGGGSTETVGGGGERGVMSSAGTGGGEVGGPIQSGPSQVPAVRLAGDRYFLTKLLQLAYFSYILRKAYPLSPVGGSRLGGTDQQRGGGAGDSKANVKEEVVNSRPSRSGNGNAGQGYSNEEVKRAYHLLSELSKRTSNLPASAWSSQVQAGSVGVRLHYAEGHVLVSADIVGQVFNAHNAHVQMQRPRGTDAAGVLMRELELHPPIEDVLRRGTGLSAGFLAEDVLAGRLLLPEKDLSMWADSGGEEMELGRAWERAEVWSRKRRFAGRDAAFGMGSSSTLAEYSGLLGCRRDVIAAVWKSSPNVCWHRCTRCGRHTAALVSANTTSGQNIFSSNGFAANESEARDGTRIGWHYARWVFGCPICGGRWIKVL
Length1436
PositionTail
OrganismChara braunii (Braun's stonewort)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Charophyceae> Charales> Characeae> Chara.
Aromaticity0.06
Grand average of hydropathy-0.411
Instability index50.09
Isoelectric point9.51
Molecular weight149371.98
Publications
PubMed=30007417

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22092
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     409.60|      40|      40|     149|     188|       1
---------------------------------------------------------------------------
   47-   81 (53.66/11.97)	VGVAG..GAGGGAGGGAGGGAGG..VAGGGAAGEM.GR.......GL
   82-  121 (53.98/12.10)	GAGEGARGETGRGGG...GAGGG....AGGGAGGETGRgltntrsGR
  122-  150 (42.78/ 7.79)	GNGKGRR.R....SRRRCGRGSGE....GLT....NTR.....rsGR
  151-  192 (66.39/16.87)	GNREGRRSRGGSSSGRRSGRSSGRRRRSGMRSGRMSGR.....krRR
  193-  229 (55.76/12.78)	GNGEGRRRR.ERKSGRRSGRSSGRGNREGVRGGRRSAR.........
  230-  257 (48.91/10.15)	GNGKGQR.........RSGRRSGRR..SVESGGEM.GR.......GL
  258-  285 (40.18/ 6.79)	GAGEGARGEMG.....RGGRGAGEEEREKERED..............
 1053- 1087 (47.94/ 9.77)	GVGGGANGTAGTMGGGSTETVGG....GGER.GVMSSA.......GT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.22|      29|     112|    1001|    1029|       2
---------------------------------------------------------------------------
 1001- 1029 (55.93/29.85)	HFLTWLRRYGDFC...RGDAATAQQGGQRLAG
 1113- 1144 (47.29/23.99)	YFLTKLLQLAYFSyilRKAYPLSPVGGSRLGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.88|      33|     697|     658|     721|       4
---------------------------------------------------------------------------
  677-  714 (54.10/27.35)	GGSEWGVRGSTRAGAGskdreQEV..SHG.AADGAMAADGA
 1377- 1412 (40.78/16.98)	CGRHTAALVSANTTSG.....QNIfsSNGfAANESEARDGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.51|      19|     327|     716|     735|       5
---------------------------------------------------------------------------
  716-  734 (31.70/ 8.31)	AGGEQAGQTDKEVSSGVEG
 1032- 1050 (35.81/10.84)	AGGATSGQSGWNTDTATTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.30|      14|     697|     658|     672|       7
---------------------------------------------------------------------------
  658-  672 (25.15/22.16)	DVpVAMVWKMQANR.W
 1357- 1371 (24.15/14.61)	DV.IAAVWKSSPNVcW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.95|      36|     306|     937|     973|       8
---------------------------------------------------------------------------
  937-  973 (58.03/36.89)	IDMQARLLLDHVGKSLETMLLNPtALEPKMCAGTGIS
 1246- 1281 (62.92/36.06)	VQMQRPRGTDAAGVLMRELELHP.PIEDVLRRGTGLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.39|      18|      23|       2|      19|       9
---------------------------------------------------------------------------
    2-   19 (35.11/14.43)	GGRAIEATGGG.GAGGAAG
   27-   45 (30.28/11.12)	GGIFVTLFGGGvGAVGAVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.75|      43|     233|     297|     339|      11
---------------------------------------------------------------------------
  297-  339 (78.56/42.04)	SSTMQILAWSPLSCPRALLTMDSKGCGSVWTQPSQGGANVARA
  531-  573 (76.19/40.51)	SSLSTFLVPSQPQEPMAMAASSTYGSDGISHDGPGGGRNVEDA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22092 with Med16 domain of Kingdom Viridiplantae
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