<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22086

Description Uncharacterized protein
SequenceMREHRAKWKWLLSVAELELVYRIAMTGAEDERAAAASALCGASLVGGWNIQEHAVRLAVKLLSPSASDEGNIHNGFHGRAPPGSYLVHCAPMLSAALAAMSQSDALHIIRLHGKTPELAAALVPICETFGNLPAVMQQITTNTDDVTSYTVFFQAFLLLVRILGAFYPPVNLPEHYHHNQPSFMSRIAGAQKSSTREQTSEPIRSGSVTLISLLSQYCVGLATSLGENQEVGAGANGNLCMFNSTDVLARLAKVKPAAAARAFLDQFPLLNRWYAMYQAGGVVPARDGMPSLKTTVERLLLMIYRKGSLMSAGGGSTLGQVAGSVTSSLAHCSNSNAVSILSAEEITPWKPLLAWDVVIAAPAFVEAALTACAHGRQSPREMMTGLGDLVDYVPAAVVPIATYLAAEAAKGSWKQVVMNGADWPRPILLSVEEEILSIIAATKTEAEVFGLASPSSPAPPKIQMSGSQGPPSLPLPLAALVNLTMKFKNAMADAILAATIPLLLRTAAACPWPSLPAVVSLLTQNHQANRQVLIAYAVALVCGSDPDVGAGLLNGCFHAGLCLHSTCTRPGVEAVARLLGHGVPGQFLPSPSSGLLSQMPQSNPSYPSEYRDASGTHGPIAPGALYLRCSPLVHDAGAVAFRITQLVALLAVEGMDVFHKAKNHRVGVISSPSFTSSIISAVGTMLPPQLSGPLQTNGRGLHPSVTTLAMSPGVQASGIASALLYMTGGTESVVSLFAEVLPSWFIVGGKGLSAQQSGAESSRVPGAISSETGGRVVEGHALARLSILCGMLAWGTGNGFQVFIDAVAAAKAQQEAAEAERQRLANEAAAQAQQTAEADAAARDQRNVASTESLIRNENQWTTILEGMIFVPLEEQADPTPAEAERTHLANVMLTMMRAIMWNNTMLAVQIHEGRQLRQIQQKDSAALSVVVRTTATYQQQQQQQQQLLNTTTARVSSIEAKTSAAPGCTTDETKQLNGRIDHVVNLIGDIGVFNGPDTISSTVTAIKTDITKLQTRPDATTKNYKMPHFDINKFDDHNKTDALAWWQRFLTEASCHTVPDDYLMKALYLQLIGGAQAWMNHLAATHTCSITELHTHITWKDFEKLWFTRFMVCNVVKAAMNEVYTCSQGNMPTRDWTTKWQKIVTTPGFDLTYFSKLDLKSGYHQIEIQPQDRYKTAFKTRYGHFEWVVMPFGLTNAPATFQAAMTTEFRDLLDRSVLIYLDDILVYSRTLNEHITHLRAVLNRLRLAKYKANRDKCEFAKQELEYLIHYVTLKGIRPLADKIQAIVDWPEPRCTTDVRSFMGLAGYYQRFIESYSKVAAPLSRLQSPKVPFEFDDAARGAFTTLKAAMQAAPALRIYDPTLPTQVTTDASGYGIGAVLEQCHEDGWHPVEYFSQKVPLVTTLDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIGRWMYYIDQFDFDPCHIPGPANRAADALSRRPDFCAIVTTAFDLDDDLQPHFVKGYKFDPTYSTLYAELSSDYPPASHYRIADRFLLLHTRGKDLLVVPQDHILRTRLLGEFHDARLSAHLGVNRTLARLRQCFHWPDVLHDVTRYIESCAVCHRNKGRSRVPFGELKPLSIPRAPRLSIAMDVTGPFPRDRHGHDGILTVVDRLSKYARFLPCKYHAAAPELARLLHTGWITNQGVPEDIVSDRDTRFMSTFWTSLMAESGTTMKPSSARHLQTDGQTERAHQTAQMMLRTVIRPDQKDWVDRLPDIEFAYNTSVHPAMCVTPFELHHGGEKARIFVDLLLPQVADIDVPCSPASIRKYRDLLIKARANMQKAQIRMQQQANRRRLPCPFREGDLVWVLSEEFVLEQDVSRKLLSKWFGPWEVTSAVEDDPAGPSFVINIPPHLTVHRVFHALKLAIYTPPSVDEFPGHQSQDPPSMDRHQEVDRVITHRKYGNKPMQIAIPDRVAKAGSDVRRVVGGHFLPRVLMRPSPPASCGQTCTGVTSPGGRLLGVLPHLRFGEGGGGESGVSDKETPRGHGSLEGGSRSGASAEELGGLRKKRRGPNGKERAHDHPPVSSMERAVLDSSMAVREGMDMAAGTLAQASTESAKMVATQVGAVASTIKEGNVVLQLLVGVMGDR
Length2152
PositionTail
OrganismChara braunii (Braun's stonewort)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Charophyceae> Charales> Characeae> Chara.
Aromaticity0.07
Grand average of hydropathy-0.133
Instability index42.31
Isoelectric point7.62
Molecular weight228075.28
Publications
PubMed=30007417

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA integration	GO:0015074	IEA:InterPro
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22086
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     583.62|     186|     298|    1186|    1393|       1
---------------------------------------------------------------------------
 1186- 1393 (282.06/254.72)	FEWVVMPfGLTNAPA.......TFQAAMTTEFrDLLDRsvliyLDDILVYSRTLNEHITHLRAVLNrlrlAKYKANrDKCEFAKQELeyLIHyvtLKG....IRPlADKI...QAIVDWPEPRCTTDVRSFMGLAGYYQRFieSYSKVAAPLSR.LQSPKVPFEFDDAARGAFTTLKA.AMQAAPALRI.YDPTLPtqVTTDASGY.GIGAVLEQCHEDG.WHPVEY
 1485- 1689 (301.57/205.31)	FDPCHIP.GPANRAAdalsrrpDFCAIVTTAF.DLDDD.....LQPHFVKGYKFDPTYSTLYAELS....SDYPPA.SHYRIADRFL..LLH...TRGkdllVVP.QDHIlrtRLLGEFHDARLSAHLGVNRTLARLRQCF..HWPDVLHDVTRyIESCAVCHRNKGRSRVPFGELKPlSIPRAPRLSIaMDVTGP..FPRDRHGHdGILTVVDRLSKYArFLPCKY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.11|      11|      17|     808|     819|       3
---------------------------------------------------------------------------
  808-  819 (15.09/11.40)	AAAKAQQeAAEA
  828-  838 (20.03/10.42)	AAAQAQQ.TAEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     210.01|      69|     299|     280|     357|       4
---------------------------------------------------------------------------
  280-  357 (103.17/88.59)	GGVVPARdGMPSLKTTVerLLLMIYRKGSLMSA..GGGSTLGQVA.GSV...TSSLAHcsNSNAVsilsAEEITPWKPLLA...WDV
  580-  657 (106.84/65.84)	GHGVPGQ.FLPSPSSGL..LSQMPQSNPSYPSEyrDASGTHGPIApGALylrCSPLVH..DAGAV....AFRITQLVALLAvegMDV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     177.46|      54|      64|     683|     737|       9
---------------------------------------------------------------------------
  683-  737 (89.92/54.94)	GTMLPPQLSGPLQTNGRGLHPSVTTLAMSPGvQASGIASALLYMTG.GTESVVSLF
  749-  803 (87.54/49.50)	GKGLSAQQSGAESSRVPGAISSETGGRVVEG.HALARLSILCGMLAwGTGNGFQVF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.69|      15|      17|     977|     991|      10
---------------------------------------------------------------------------
  977-  991 (26.94/19.75)	LNG..RIDHVVNLI.GDI
  994- 1011 (16.75/ 9.20)	FNGpdTISSTVTAIkTDI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22086 with Med33 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EAAEAERQRLANEAAAQAQQTAEADAAARDQRNVASTES
2) GGHFLPRVLMRPSPPASCGQTCTGVTSPGG
3) LGVLPHLRFGEGGGGESGVSDKETPRGHGSLEGGSRSGASAEELGGLRKKRRGPNGKERAHDHPPVSSMERAVLDSSMAVREGMDMAAGTLAQASTESAKMVATQVG
4) XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
815
1991
2023
1411
853
2020
2129
1464










Molecular Recognition Features






MoRF SequenceStartStop




1) TYRPVIR
46
52