<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22083

Description Uncharacterized protein
SequenceMMLSPGGFVSSPAAPSPATSQGGPRTSVSAGASPLPTTHLGSLDYPPSLQQQQQQQQYGSSAVPVADTKDAPPMPKGEEGPARPPRPPPAIALSLALERFESASCQIAAIRSGAEALIEAVDHASRLNRNSSSSAINSQTPASISPPLPPPPPPPSSFSSTSSDQVGGVGSSARGKVASPPAPSSASQGTSTGGGFRSSPGLLAGVAPTPQDAAGAGIPAAIPVGSSDVSGLKPGMVVLSVAKAVRKAINELRVTGKELLAALVVDSGAPSASCRNAATATSRVSAGDPSAPVPPAALSSSLPHAAAPPLPPPPPCPDGSRLLFEWCRYLEGHAVATAIEHAKAASTAFAEQSGEWQRGRCRRISSASCSMGDPGSNPFRGRLGEGGNRRGLGEGNDLGVIFQRVTDTCPNMKLSLSSFSGWGRHVYPPGVACQGGGRFHDLTEARSARHVYQPEAAGVEDGAGARQQRLQSQLSHPDFQLMNDGQKDVGLISPVGMGNLGLIARGWKSSSARLGAGGVGGGEVLRKKDGGNASVIHVACPGVFQAVIALESRSRPVAISVFAPDEVVGVHAWGLSSRHVFSLLTTHVLRALHCFNEEEEEEEEEEGGGGLSRDDGGATAAESGRGRVGGLERLLKWLYSYRSLFTEPCAVCRKVLAHDPPSRALLPPILRPFGIEKRRQERQEQKRKRKEDTLRQQVQCAHRAAHAGSGLIPADLAAMNRAGKNEMTLPLISPVGALGSSSLASLAGGGGGGSDGENRVGVGAMNDRSGRFLAGIVPQQGLCGNSPSHLGGYGREEKREESLAYHINCVLKKESHGANEPAS
Length823
PositionTail
OrganismChara braunii (Braun's stonewort)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Charophyceae> Charales> Characeae> Chara.
Aromaticity0.04
Grand average of hydropathy-0.327
Instability index62.49
Isoelectric point8.74
Molecular weight84828.22
Publications
PubMed=30007417

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22083
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.26|      23|      24|     167|     189|       1
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   35-   60 (25.30/ 6.25)	LPTTHLGSLDYPPSLQQQQQQ.qqyGS
  169-  195 (33.96/11.18)	VGSSARGKVASPPAPSSASQGtstgGG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     639.24|     141|     230|     373|     532|       2
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  303-  419 (141.23/86.52)	PHAAA....PPLPP....PPPCPD.GSRllFEwcRY....LEGHAvATAIEHAKAASTafAEQSGEWQR................................G..............RCRRISSASCSMG.............dpgsnpfrgRLGEGG.NRRGlgeGNDL.GV.......IFQRVTDTCPNMKLSLSSF
  420-  550 (215.13/115.99)	SGWGR....HVYPP....GVACQG.GGR..FH..DL....TEARS.ARHVYQPEAAGV..EDGAGARQQ........RLQSQLSHPDFQLMNDGQKD...VGLISPVgmGNLGliaRGWKSSSARLGAGGVGGGEVLRKKDG..............G.NA..........SV.......I..HV..ACPGVFQAVIAL
  551-  658 (114.83/52.43)	ESRSRpvaiSVFAPdevvGVHAWG.LSS..RH..VFslltTHVLR.ALHCFNEEEEEE..EEEEGG..............GGLSR......DDG.......................G..ATAAESGRGRVGGLERLLK.................................wlysyrsLF...TEPCAVCRKVL.AH
  659-  790 (168.05/85.19)	DPPSR....ALLPP....ILRPFGiEKR..RQ..ER....QEQKR.KR.........K..ED..TLRQQvqcahraaHAGSGLIPADLAAMNRAGKNemtLPLISPV..GALG......SSSLASL.AGGGGGG.....SDG.......enRVGVGAmNDRS...GRFLaGI.......VPQQ..GLCGN...SPSHL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.57|      15|      63|      75|      89|       3
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   75-   89 (32.79/13.53)	PKGEEGPARPPRPPP
  141-  155 (33.78/14.18)	PASISPPLPPPPPPP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.99|      20|      27|     229|     254|       6
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  229-  248 (31.96/27.02)	VSGLKPGMVVLSVAKAV..RKA
  256-  277 (27.02/ 9.35)	GKELLAALVVDSGAPSAscRNA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.48|      26|     187|       8|      33|       7
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    8-   33 (47.62/24.65)	FVSSPA.....APSPATSQG.GPRTSVSAGAS
  196-  227 (38.86/18.41)	FRSSPGllagvAPTPQDAAGaGIPAAIPVGSS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22083 with Med27 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EALIEAVDHASRLNRNSSSSAINSQTPASISPPLPPPPPPPSSFSSTSSDQVGGVGSSARGKVASPPAPSSASQGTSTGGGFRSSPGLLAGVAPTP
2) HVYQPEAAGVEDGAGARQQRLQSQLSHPDF
3) MMLSPGGFVSSPAAPSPATSQGGPRTSVSAGASPLPTTHLGSLDYPPSLQQQQQQQQYGSSAVPVADTKDAPPMPKGEEGPARPPRPPPAIALSLA
4) RNAATATSRVSAGDPSAPVPPAALSSSLPHAAAPPLPPPPP
115
450
1
275
210
479
96
315










Molecular Recognition Features






MoRF SequenceStartStop




1) HLGSLDY
2) IALSLAL
39
91
45
97