Description | Uncharacterized protein (Fragment) |
Sequence | GHRLKNFDCRLFRELKQIPRENSLLLTGTPLQNNLAELWALLNFILPEIFNDVRQFQSWFDFATAKDQASNQEDADRERSRQVVKKLHQILRPFLLRRLKEDVEKSLPPKKEIILYARMTEQQQVIYQNLAKRTLEEYIQTVAPGARQTSLNNRIMQLRKVCNHPDLIMGHVACSRPPPMGGGVPPQQSNSGMGQPPPLSGPPMQNRGNAPMGQNLHSQRPVVPPPTSAAPMSFASLPPHPSHPLQQPPMRYGPPLGQQQPAPPQQQQQQQQQQQQQQQQQAFRSPAGGLGQPPTGMPPSLVMPPPSQGLPPPSTGMNLSQVLPPPSQGMQPPSQNMQQPSQQALQQKAMPQSQQVIHPPPPQGMQQPPPQGLQHSQQGMQLSLHGMQQQGGHLVQGGMQPPPQGMQQQRIQPPPQQQGMTPPQHGMQPPQQQGMHTGNQAMPPMSQGGMTSQGARGLSGIGPPPSMPPPHNVGGVSGQNMGPPPNMGQRSLSSPMRSGQQHAPPPSSQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQMQNAAGALQQHQRPPAGSQGPHIQPPQLVMQGPPMQNMNSVVQPGNAYGIRGFPPTAQQPQQQYGPPMSPFSILPTLNHQHHHGQPSFMPSATPSGQSAAMQPPPQHQQQQLTGPPHWGGQLPSPGGGAGTTLQPLPQQQPQAQGQPQVVVPVSGAQVGAAPPAMAMAVAAPQLQPVAQQQHQQHQQHQQHQQHQQQQQHQQHQQHQRPPTVMSNAVAMSPTAAQQPVGVAAASPAGAMMTPSPVGATAAASPAAKPAVAGTHGGLGSAPAPSSSSSATSSSASGAGSAPATVTPSEWSEHTAPDGRKYYFNRKTKSSSWEKPMELMTPTERADAMTMWKEFTTTDGRKYYYNKYTRQSMWRMPAEMKLARDKAAREQAVKPATAGLSTAAAAPSAAASAGQAAASAAATAATGSVSGSAAATASGPAGAGAAAVAPTGTPATATAAAMATSTAAAVPPAAPGPVAGPAGAPGTVLASVAAPPAVVGSVSGGLAVPPVSPAAAPAAMAANTGGAGVVAPVVAPSAQSPMIVPSPIAANPALVSPVATVLPMRGPGGPVTALFPAAAAGATDAATVPLVQAAAAMPIVSSVAQNAAGGATLANATTVGAAAGPPAAAAAVADAVAGAAAPDSTPTVAITAPAGGPQAAGKDKPAEEQAEASAQDLEEAKKAMPSTGKINVTPVTDTKPVVQAKEPLVFANKNEAKLAFKDLLESVNVGCDWTWEQAMRLIANDERYGALKTLGERKQAFNEYITQRRKQEKDEKRLKSKKAREDFVAMLADSKELQSTMRWNKAAVLFEEDARFKAIENEREREDLFEDYLVDLERKEREQARVERKVNLARYREFLESCDFIKANTQWRKVQDRLEDDERCQKLEKIDRLEVFQEFIRDLEKKEEEERQAQKEVIRRKERKNRDELRKLFDSRRKSGDLNAKTRWRDFVSTITDHPAYIAVADNSSGATPKELFDDVMEEIENQFHEDKGRIKDAVKSKDIQVSGNWTLERFKTALFGEGGGGGDLGSIAESNVKIVFEDLVDRAKEKEEKEMKKRKRAADDFSDFLRGTKSIQATSKWEDVKSSIDDVPEYKTVPDEAERIRIFNEHIAYLQQRAREKERKKEKEKEEKAKKEREKEKRKEREREKEREREEKKEKEKEDKKEREKEKEREKEKEREKEKEREKEKEKEREKEKEKEREKEKEKERERSKKDKEISADDGDASGAANDHTGNHKSEEKKRDRDRDRDRERSERSDRDRRSRKRHRSDSSDDDVSEEEKESSKRRSRRHDRGSDHRKSSARKHGHGSDSESDQDKHLSRRHRRHEGSSRRNGVMEAEMTQELEDGEVDGEDGEIR |
Length | 1902 |
Position | Unknown |
Organism | Chara braunii (Braun's stonewort) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Charophyceae> Charales> Characeae> Chara. |
Aromaticity | 0.04 |
Grand average of hydropathy | -0.990 |
Instability index | 65.47 |
Isoelectric point | 9.15 |
Molecular weight | 208080.11 |
Publications | PubMed=30007417 |
Annotated function |
|
GO - Cellular Component | |
GO - Biological Function | ATP binding GO:0005524 IEA:InterPro nucleosome-dependent ATPase activity GO:0070615 IEA:InterPro |
GO - Biological Process | mRNA cis splicing, via spliceosome GO:0045292 IEA:InterPro |
Binary Interactions |
Repeats | >MDP22078 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 7| 169.44| 15| 15| 1725| 1739| 1 --------------------------------------------------------------------------- 1664- 1676 (18.45/ 6.32) .REKERKKEKEKE.E 1677- 1691 (25.41/11.09) KAKKEREKEKRKERE 1693- 1707 (24.30/10.33) EKEREREEKKEKEKE 1709- 1723 (23.93/10.08) KKEREKEKEREKEKE 1725- 1739 (29.01/13.57) EKEKEREKEKEKERE 1741- 1755 (29.01/13.57) EKEKEREKEKEKERE 1791- 1805 (19.32/ 6.92) DRDRDRERSERSDRD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 5| 151.37| 15| 15| 509| 523| 2 --------------------------------------------------------------------------- 259- 273 (29.47/ 6.91) QQPAPPQQQQQQQQQ 509- 523 (30.78/ 7.61) QQQQQQQQQQQQQQQ 525- 539 (30.78/ 7.61) QQQQQQQQQQQQQQQ 540- 554 (30.78/ 7.61) QQQQQQQQQQQQQQQ 741- 755 (29.57/ 6.96) QHQQHQQHQQHQQQQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 112.50| 17| 17| 302| 318| 3 --------------------------------------------------------------------------- 292- 311 (29.23/ 7.69) QPPTGMPpslVMP.PP.SQGLP 312- 331 (28.81/ 7.45) PPSTGMNlsqVLP.PP.SQGMQ 360- 374 (26.86/ 6.35) PPPQGMQ......qPP.PQGLQ 401- 421 (27.60/ 6.77) PPPQGMQqqrIQP.PPqQQGMT --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 143.15| 36| 40| 855| 890| 4 --------------------------------------------------------------------------- 855- 890 (71.55/40.63) WSEHTAPDGRKYYFNRKTKSSSWEKPMELMTPTERA 896- 931 (71.60/40.67) WKEFTTTDGRKYYYNKYTRQSMWRMPAEMKLARDKA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 41.82| 14| 17| 177| 193| 5 --------------------------------------------------------------------------- 177- 191 (21.51/ 6.04) PpPMGGGVPPQQSNS 443- 456 (20.31/ 6.01) P.PMSQGGMTSQGAR --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 8| 344.80| 40| 40| 947| 986| 6 --------------------------------------------------------------------------- 464- 508 (54.18/16.28) PPSMPPPHN...VGG...VSG...Q........NMGPPPnmgqrslssPMRS..GQQH.......APPP..SS 586- 626 (40.99/10.36) VMQGPPMQNmnsVVQ.P...GNAyG........IRGFPP.........TAQQ..PQQQ.......YGPP..MS 779- 812 (51.71/15.17) TAAQQPV.G...VAA.A...SPA.G........AMMTPS.........PVGA..T..A.......AASP..AA 967- 991 (40.17/ 9.99) TAATGSVSG...SAA.ATASGPA.G.........................................AGA..AA 992- 1039 (34.36/ 7.38) VAPTGT......PAT.ATAAAMA.T......stAAAVPP.........AAPGpvAGPAgapgtvlASVA..AP 1040- 1084 (42.73/11.14) PAVVGSVSG...GLA.VPPVSPA.A........APAA...........MAAN..TGGAgvvapvvAPSA..QS 1093- 1137 (39.37/ 9.63) AANPALVSP...VATvLPMRGPG.G......pvTALFPA.........AAAG..ATDA.......ATVPlvQA 1138- 1185 (41.30/10.49) AAAMPIVSS...VAQ.NAAGGAT.LanattvgaAAGPPA.........AAAA..VADA.......VAGA..AA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 51.97| 17| 17| 1834| 1850| 7 --------------------------------------------------------------------------- 1835- 1852 (26.69/16.39) RHDRGSDHRKSSARKHgH 1853- 1869 (25.29/15.07) GSDSESDQDKHLSRRH.R --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 55.07| 21| 21| 1353| 1373| 9 --------------------------------------------------------------------------- 1320- 1360 (19.30/ 9.28) KRLKSKKARED.FvamladskelqstmrwnkaavLFE....EDARF 1361- 1390 (19.81/ 9.74) KAIENEREREDLF................edylvDLErkerEQARV 1429- 1455 (15.95/ 6.28) QKLE.KIDRLEVF.............qefirdleKKE....EEER. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 128.19| 38| 44| 654| 697| 10 --------------------------------------------------------------------------- 654- 697 (70.62/27.39) QSAAMQPPPQHQQQQLTGPPHWGGQLPSPgggagtTLQPLPQQQ 701- 738 (57.57/15.24) QGQPQVVVPVSGAQVGAAPPAMAMAVAAP......QLQPVAQQQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 86.52| 27| 121| 813| 843| 11 --------------------------------------------------------------------------- 813- 843 (44.64/27.82) KPAVAgthgGLG.SAPAPSSSSSATSSSASGA 938- 965 (41.88/17.62) KPATA....GLStAAAAPSAAASAGQAAASAA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 57.54| 15| 44| 198| 214| 12 --------------------------------------------------------------------------- 198- 214 (25.70/11.82) PLSGPPMqnRGNAPMGQ 244- 258 (31.84/10.32) PLQQPPM..RYGPPLGQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 62.50| 15| 121| 635| 649| 13 --------------------------------------------------------------------------- 635- 649 (31.30/15.38) NHQHHHGQPSFMPSA 759- 773 (31.21/15.31) QHQQHQRPPTVMSNA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 262.25| 66| 133| 1458| 1523| 14 --------------------------------------------------------------------------- 1458- 1523 (111.05/75.61) QKEVIRRKERKNRDE..LRK....LF.DSRRKSGDLNAKTRWRDFVSTITDHPAYIAVADNSSGATPKELFDD 1539- 1596 (62.28/38.96) IKDAVKSKDIQVSGNwtLERfktaLF.GEGGGGGDLG.........S.IAESNVKIVFEDLVDRAKEKE.... 1597- 1654 (88.93/58.99) EKEMKKRK..RAADD..........FsDFLRGTKSIQATSKWEDVKSSIDDVPEYKTVPDE...AERIRIFNE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 81.18| 28| 133| 1259| 1291| 15 --------------------------------------------------------------------------- 1259- 1291 (43.27/46.20) EAKL...AFKDLLESvnvgCDW.....TWEQAM.RLiANDER 1391- 1427 (37.91/25.09) ERKVnlaRYREFLES....CDFikantQWRKVQdRL.EDDER --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 51.20| 16| 39| 385| 400| 16 --------------------------------------------------------------------------- 342- 357 (24.42/ 7.08) QQALQ...QKAMPQSQQVI 377- 395 (26.78/ 8.58) QQGMQlslHGMQQQGGHLV --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 62.10| 20| 41| 1771| 1790| 17 --------------------------------------------------------------------------- 1771- 1790 (34.87/24.08) SGAANDH.TGNHKSEEKKRDR 1814- 1834 (27.23/16.91) SDSSDDDvSEEEKESSKRRSR --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 97.47| 31| 33| 89| 121| 21 --------------------------------------------------------------------------- 89- 119 (51.11/37.59) QILRPFLLRR.LKEDVEKSLPPKKEIILYARM 124- 155 (46.37/26.71) QVIYQNLAKRtLEEYIQTVAPGARQTSLNNRI --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) GRKYYFNR 2) GVMEAEMTQELE 3) QDKHLSRRHRRH 4) YGIRG | 863 1879 1860 605 | 870 1890 1871 609 |
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