<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22078

Description Uncharacterized protein (Fragment)
SequenceGHRLKNFDCRLFRELKQIPRENSLLLTGTPLQNNLAELWALLNFILPEIFNDVRQFQSWFDFATAKDQASNQEDADRERSRQVVKKLHQILRPFLLRRLKEDVEKSLPPKKEIILYARMTEQQQVIYQNLAKRTLEEYIQTVAPGARQTSLNNRIMQLRKVCNHPDLIMGHVACSRPPPMGGGVPPQQSNSGMGQPPPLSGPPMQNRGNAPMGQNLHSQRPVVPPPTSAAPMSFASLPPHPSHPLQQPPMRYGPPLGQQQPAPPQQQQQQQQQQQQQQQQQAFRSPAGGLGQPPTGMPPSLVMPPPSQGLPPPSTGMNLSQVLPPPSQGMQPPSQNMQQPSQQALQQKAMPQSQQVIHPPPPQGMQQPPPQGLQHSQQGMQLSLHGMQQQGGHLVQGGMQPPPQGMQQQRIQPPPQQQGMTPPQHGMQPPQQQGMHTGNQAMPPMSQGGMTSQGARGLSGIGPPPSMPPPHNVGGVSGQNMGPPPNMGQRSLSSPMRSGQQHAPPPSSQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQMQNAAGALQQHQRPPAGSQGPHIQPPQLVMQGPPMQNMNSVVQPGNAYGIRGFPPTAQQPQQQYGPPMSPFSILPTLNHQHHHGQPSFMPSATPSGQSAAMQPPPQHQQQQLTGPPHWGGQLPSPGGGAGTTLQPLPQQQPQAQGQPQVVVPVSGAQVGAAPPAMAMAVAAPQLQPVAQQQHQQHQQHQQHQQHQQQQQHQQHQQHQRPPTVMSNAVAMSPTAAQQPVGVAAASPAGAMMTPSPVGATAAASPAAKPAVAGTHGGLGSAPAPSSSSSATSSSASGAGSAPATVTPSEWSEHTAPDGRKYYFNRKTKSSSWEKPMELMTPTERADAMTMWKEFTTTDGRKYYYNKYTRQSMWRMPAEMKLARDKAAREQAVKPATAGLSTAAAAPSAAASAGQAAASAAATAATGSVSGSAAATASGPAGAGAAAVAPTGTPATATAAAMATSTAAAVPPAAPGPVAGPAGAPGTVLASVAAPPAVVGSVSGGLAVPPVSPAAAPAAMAANTGGAGVVAPVVAPSAQSPMIVPSPIAANPALVSPVATVLPMRGPGGPVTALFPAAAAGATDAATVPLVQAAAAMPIVSSVAQNAAGGATLANATTVGAAAGPPAAAAAVADAVAGAAAPDSTPTVAITAPAGGPQAAGKDKPAEEQAEASAQDLEEAKKAMPSTGKINVTPVTDTKPVVQAKEPLVFANKNEAKLAFKDLLESVNVGCDWTWEQAMRLIANDERYGALKTLGERKQAFNEYITQRRKQEKDEKRLKSKKAREDFVAMLADSKELQSTMRWNKAAVLFEEDARFKAIENEREREDLFEDYLVDLERKEREQARVERKVNLARYREFLESCDFIKANTQWRKVQDRLEDDERCQKLEKIDRLEVFQEFIRDLEKKEEEERQAQKEVIRRKERKNRDELRKLFDSRRKSGDLNAKTRWRDFVSTITDHPAYIAVADNSSGATPKELFDDVMEEIENQFHEDKGRIKDAVKSKDIQVSGNWTLERFKTALFGEGGGGGDLGSIAESNVKIVFEDLVDRAKEKEEKEMKKRKRAADDFSDFLRGTKSIQATSKWEDVKSSIDDVPEYKTVPDEAERIRIFNEHIAYLQQRAREKERKKEKEKEEKAKKEREKEKRKEREREKEREREEKKEKEKEDKKEREKEKEREKEKEREKEKEREKEKEKEREKEKEKEREKEKEKERERSKKDKEISADDGDASGAANDHTGNHKSEEKKRDRDRDRDRERSERSDRDRRSRKRHRSDSSDDDVSEEEKESSKRRSRRHDRGSDHRKSSARKHGHGSDSESDQDKHLSRRHRRHEGSSRRNGVMEAEMTQELEDGEVDGEDGEIR
Length1902
PositionUnknown
OrganismChara braunii (Braun's stonewort)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Charophyceae> Charales> Characeae> Chara.
Aromaticity0.04
Grand average of hydropathy-0.990
Instability index65.47
Isoelectric point9.15
Molecular weight208080.11
Publications
PubMed=30007417

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
nucleosome-dependent ATPase activity	GO:0070615	IEA:InterPro

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22078
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     169.44|      15|      15|    1725|    1739|       1
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 1664- 1676 (18.45/ 6.32)	.REKERKKEKEKE.E
 1677- 1691 (25.41/11.09)	KAKKEREKEKRKERE
 1693- 1707 (24.30/10.33)	EKEREREEKKEKEKE
 1709- 1723 (23.93/10.08)	KKEREKEKEREKEKE
 1725- 1739 (29.01/13.57)	EKEKEREKEKEKERE
 1741- 1755 (29.01/13.57)	EKEKEREKEKEKERE
 1791- 1805 (19.32/ 6.92)	DRDRDRERSERSDRD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     151.37|      15|      15|     509|     523|       2
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  259-  273 (29.47/ 6.91)	QQPAPPQQQQQQQQQ
  509-  523 (30.78/ 7.61)	QQQQQQQQQQQQQQQ
  525-  539 (30.78/ 7.61)	QQQQQQQQQQQQQQQ
  540-  554 (30.78/ 7.61)	QQQQQQQQQQQQQQQ
  741-  755 (29.57/ 6.96)	QHQQHQQHQQHQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     112.50|      17|      17|     302|     318|       3
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  292-  311 (29.23/ 7.69)	QPPTGMPpslVMP.PP.SQGLP
  312-  331 (28.81/ 7.45)	PPSTGMNlsqVLP.PP.SQGMQ
  360-  374 (26.86/ 6.35)	PPPQGMQ......qPP.PQGLQ
  401-  421 (27.60/ 6.77)	PPPQGMQqqrIQP.PPqQQGMT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.15|      36|      40|     855|     890|       4
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  855-  890 (71.55/40.63)	WSEHTAPDGRKYYFNRKTKSSSWEKPMELMTPTERA
  896-  931 (71.60/40.67)	WKEFTTTDGRKYYYNKYTRQSMWRMPAEMKLARDKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.82|      14|      17|     177|     193|       5
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  177-  191 (21.51/ 6.04)	PpPMGGGVPPQQSNS
  443-  456 (20.31/ 6.01)	P.PMSQGGMTSQGAR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     344.80|      40|      40|     947|     986|       6
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  464-  508 (54.18/16.28)	PPSMPPPHN...VGG...VSG...Q........NMGPPPnmgqrslssPMRS..GQQH.......APPP..SS
  586-  626 (40.99/10.36)	VMQGPPMQNmnsVVQ.P...GNAyG........IRGFPP.........TAQQ..PQQQ.......YGPP..MS
  779-  812 (51.71/15.17)	TAAQQPV.G...VAA.A...SPA.G........AMMTPS.........PVGA..T..A.......AASP..AA
  967-  991 (40.17/ 9.99)	TAATGSVSG...SAA.ATASGPA.G.........................................AGA..AA
  992- 1039 (34.36/ 7.38)	VAPTGT......PAT.ATAAAMA.T......stAAAVPP.........AAPGpvAGPAgapgtvlASVA..AP
 1040- 1084 (42.73/11.14)	PAVVGSVSG...GLA.VPPVSPA.A........APAA...........MAAN..TGGAgvvapvvAPSA..QS
 1093- 1137 (39.37/ 9.63)	AANPALVSP...VATvLPMRGPG.G......pvTALFPA.........AAAG..ATDA.......ATVPlvQA
 1138- 1185 (41.30/10.49)	AAAMPIVSS...VAQ.NAAGGAT.LanattvgaAAGPPA.........AAAA..VADA.......VAGA..AA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.97|      17|      17|    1834|    1850|       7
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 1835- 1852 (26.69/16.39)	RHDRGSDHRKSSARKHgH
 1853- 1869 (25.29/15.07)	GSDSESDQDKHLSRRH.R
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      55.07|      21|      21|    1353|    1373|       9
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 1320- 1360 (19.30/ 9.28)	KRLKSKKARED.FvamladskelqstmrwnkaavLFE....EDARF
 1361- 1390 (19.81/ 9.74)	KAIENEREREDLF................edylvDLErkerEQARV
 1429- 1455 (15.95/ 6.28)	QKLE.KIDRLEVF.............qefirdleKKE....EEER.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.19|      38|      44|     654|     697|      10
---------------------------------------------------------------------------
  654-  697 (70.62/27.39)	QSAAMQPPPQHQQQQLTGPPHWGGQLPSPgggagtTLQPLPQQQ
  701-  738 (57.57/15.24)	QGQPQVVVPVSGAQVGAAPPAMAMAVAAP......QLQPVAQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.52|      27|     121|     813|     843|      11
---------------------------------------------------------------------------
  813-  843 (44.64/27.82)	KPAVAgthgGLG.SAPAPSSSSSATSSSASGA
  938-  965 (41.88/17.62)	KPATA....GLStAAAAPSAAASAGQAAASAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.54|      15|      44|     198|     214|      12
---------------------------------------------------------------------------
  198-  214 (25.70/11.82)	PLSGPPMqnRGNAPMGQ
  244-  258 (31.84/10.32)	PLQQPPM..RYGPPLGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.50|      15|     121|     635|     649|      13
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  635-  649 (31.30/15.38)	NHQHHHGQPSFMPSA
  759-  773 (31.21/15.31)	QHQQHQRPPTVMSNA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     262.25|      66|     133|    1458|    1523|      14
---------------------------------------------------------------------------
 1458- 1523 (111.05/75.61)	QKEVIRRKERKNRDE..LRK....LF.DSRRKSGDLNAKTRWRDFVSTITDHPAYIAVADNSSGATPKELFDD
 1539- 1596 (62.28/38.96)	IKDAVKSKDIQVSGNwtLERfktaLF.GEGGGGGDLG.........S.IAESNVKIVFEDLVDRAKEKE....
 1597- 1654 (88.93/58.99)	EKEMKKRK..RAADD..........FsDFLRGTKSIQATSKWEDVKSSIDDVPEYKTVPDE...AERIRIFNE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.18|      28|     133|    1259|    1291|      15
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 1259- 1291 (43.27/46.20)	EAKL...AFKDLLESvnvgCDW.....TWEQAM.RLiANDER
 1391- 1427 (37.91/25.09)	ERKVnlaRYREFLES....CDFikantQWRKVQdRL.EDDER
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.20|      16|      39|     385|     400|      16
---------------------------------------------------------------------------
  342-  357 (24.42/ 7.08)	QQALQ...QKAMPQSQQVI
  377-  395 (26.78/ 8.58)	QQGMQlslHGMQQQGGHLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.10|      20|      41|    1771|    1790|      17
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 1771- 1790 (34.87/24.08)	SGAANDH.TGNHKSEEKKRDR
 1814- 1834 (27.23/16.91)	SDSSDDDvSEEEKESSKRRSR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.47|      31|      33|      89|     121|      21
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   89-  119 (51.11/37.59)	QILRPFLLRR.LKEDVEKSLPPKKEIILYARM
  124-  155 (46.37/26.71)	QVIYQNLAKRtLEEYIQTVAPGARQTSLNNRI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22078 with Med35 domain of Kingdom Viridiplantae
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