<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22076

Description Uncharacterized protein
SequenceMLGDISAFVEPATISQRFDVLDTKISQQQQTDHSNNNSSSRPYKMPTFRIEKFDDYTHQDTIVWWQGFTTELGIHEVPDHLFINTKGGCQIWLNHMATIHGVQVSDLHKTVSWEDMTKEWKKRFIVDDAPTLAINRIFTMAQGSTPTRDWLTDWQKIVATPDLDLPFSHLRREFFNRSCAALILALGDREQYNTFAEIINKSREIIKTNRPAAHEKSTWQPTYVEKVKTGPRPQHVAAVHSDSGEDPAAAQASHEGDQVDVVQPRSNNKSRGNGKAKSASQAGNRQPAPWVKFNLTEAEYKYRGHYGCLPAPLMDVGVEVVDLHAYIAKIDCEFKTQEYDDIDAPLLYVRIQIRQATCSALIDCGASRNYISQDFMVRAGLGPRVWRKSQSTQVTLADGHTHKSIDRCIDDVPVYFALHASEAVSFDILDTKFDMILGMPWLRSEDHPVNFYLRTVHVRDRNGVLDPCTVPPPYPSISCHVVSAASMRASIIRDDIEEMGACFLHALPPHDASPTDSSSDPRITELLDAYXDVFEGPHGVVPDRPIRHEIILEDGATIRNAGPLPRIDDLLDRLGGAKFFSKLDLKPGYHQLEIRKEDRYKTAFKTRYGHFEWLVMPFGLTNAPTTFQAAMTTEFRHMLDRFVLIYLDDILVYSRSLDEHVEHLRTVLERLRQAKYKANRDKCEFAWQELEYLGHYVTPQGIRPLADKIEALRVWPEPTNTTDVRSFMGLAGYYQRFITGYSRIAAPMTILQSPKVSFVFDDDARRSFRALKTTMLMAPVLSISDPTLPTRMTTDASGYGIGAVLEQHDGDDWHPVEYFSHKVPPINSLDDARKKELLAFVMALKRWRHFLLGRRRFTWVTDDNPLTSYKTQDTVSSMIGRWTYFIDQFDFTPKHLPGLSNRTADALSRRPDLCAMTHHAFAFDEELQRHFIRGYESDPDFATLYAQLSSDHPPASHYRIVDGYLLLHSRGKDLLCVPRDRRLRTRLLDEYHDSRLAGHFGVNRTIARLLQRFRWPDLITDVTRYCDSCKVCRRSKPRNRNPYGELRPMPIPQEPGLSIAMDVTGPFPRDRLGHDDILTVVDRLILYLLQFFEAMGRELLAPGSGMTIVDMSDSVLEVSVGHGSTIRLSLEALLTGGELSRSESQETPARRDQQAGKDPGLGHWTAKHSTGKEPAAMEIDGTLSKSEEEEDGKAKWRGPALLMRPRSKAVSILFKQAFHRALFSDPKGGQLPLLSTVSNVSGPGPRTSDLASGAGGMSGAGGLSGVKGRAGGLEAGGQGGPVGIGGGAVDATRSGGVDGRGSSSLSASFSRLVCGILSHQVYAAKVQAALEQQTRANHYLRLFCLPTWHHQVSAWELSLCLPNYWIHIKGQDVAARGMSTVFRGRACRPILRPIAKSSKEHTNSASNFQNRLQFSMDREIEEEMGLSTVFKCIVIVRDERIYVEGIHGMIGSVVQDGCFLEGVHVRGSLIFSIPEMESFIVNQVIGHMSQEPIIPF
Length1496
PositionHead
OrganismChara braunii (Braun's stonewort)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Charophyceae> Charales> Characeae> Chara.
Aromaticity0.09
Grand average of hydropathy-0.371
Instability index43.52
Isoelectric point6.71
Molecular weight168015.79
Publications
PubMed=30007417

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22076
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.37|      28|     495|     537|     621|       1
---------------------------------------------------------------------------
  537-  566 (47.92/18.72)	PHGVVPDRPIRHEIILEDGATIrnAGPLPR
 1042- 1069 (55.45/30.18)	PYGELRPMPIPQEPGLSIAMDV..TGPFPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     144.48|      45|     495|      79|     131|       4
---------------------------------------------------------------------------
   81-  127 (80.71/57.12)	LFINTKGGCQIWLNHMATIHG..VQVSDLHKTVSWEDMtkEWKKRFIVD
  317-  341 (32.52/14.47)	....................G..VEVVDLHAYIAKIDC..EFKTQEYDD
 1222- 1250 (31.25/ 9.97)	LFSDPKGGQLPLLSTVSNVSGpgPRTSDL....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.75|      52|     495|     819|     885|       5
---------------------------------------------------------------------------
  819-  870 (95.19/85.74)	FSHKV...PPI.NSLDDA..RKKELL.....AFVMALKRWRHFLLGRRR.......FTWVTDDNPLTS.YK
  889-  959 (65.57/33.17)	FDFTPkhlPGLsNRTADAlsRRPDLCamthhAFAFDEELQRHFIRGYESdpdfatlYAQLSSDHPPAShYR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.20|      40|     495|     572|     621|       7
---------------------------------------------------------------------------
  572-  613 (63.84/71.75)	DR.....LGGAKFFSK.LDLKPGYHQ..LEIRKEDRYKTAfKTRYgHFEW
  640-  687 (55.36/32.86)	DRfvliyLDDILVYSRsLDEHVEHLRtvLERLRQAKYKAN.RDKC.EFAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.45|      15|      15|    1254|    1268|       8
---------------------------------------------------------------------------
 1254- 1268 (29.06/16.30)	AGGMS..GAGGLSGVKG
 1270- 1286 (25.39/13.29)	AGGLEagGQGGPVGIGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.57|      20|      30|    1311|    1330|      11
---------------------------------------------------------------------------
 1311- 1330 (34.49/24.69)	RLVC.GILSHQVYAAKVQAAL
 1341- 1361 (37.08/27.18)	RLFClPTWHHQVSAWELSLCL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.67|      11|     495|     373|     386|      13
---------------------------------------------------------------------------
  373-  383 (20.97/ 6.39)	QDFMVRAGLGP
  725-  735 (20.70/11.40)	RSFMGLAGYYQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22076 with Med17 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GELSRSESQETPARRDQQAGKDPGLGHWTAKHSTGKEPAAMEIDGTLSKSEEEEDGKAKWRGPAL
2) NRPAAHEKSTWQPTYVEKVKTGPRPQHVAAVHSDSGEDPAAAQASHEGDQVDVVQPRSNNKSRGNGKAKSASQAG
1137
209
1201
283










Molecular Recognition Features






MoRF SequenceStartStop




1) DIKGDLMELDQGLEG
2) ITGAYVMY
3) MAASAYPPPPPFYRLYKHFKSDEEEGEEDGR
212
63
1
226
70
31