<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22071

Description Uncharacterized protein
SequenceMERGRQGRKKASGSRDDKDGSLPHNNLDSEMQWLTEHANTSEGLEHGFVYSLPHERPDAEQGQQCPPGQEPFKFRWPLPPGTPSGKDVLERLRMIQSSHCTFVQPGTSLPVKKGTSFAKGTRLGKTSSGGSFNHDSGSTVVTPMGPPSGPGLVQNGGFSQRQQPAGSSVSGMASQGMMTGQMGAATRHDAGGGVDGGGGKTFTSFGGGDGGCPRPSNGGGTSSAPGSGTGFSVPFQSSFIGRAPGGVGGGVRVVADASQSSGDYRGAGPGSNDLRTGGPCEAGGTQSDGMHRHSGSMSWGVQGGIGGGSRETNASGNDVDLMDDDDDALLESLDIDQIVAAHREKQSSQVTPIRGADFRTLGSPEPNKEQECSTRGQPQECSTPVQRVPDLEWICSHGTQVYLCVSLPEHLKELKDQLLVVLQKMVDNANDLSPMRSEELRKERATLTKRIAAIEERLKMATPDDERRQSHYTAGAGLGMASPFVRNGPWSSNGPIRGEESGGVGRVAGGVGTGGNVPGGSSWQSQGFSKKLADASTSPVPPPPVPPSPPAIPPFPPPTPPSSGYGWDGGGFAGPAGRPDYGGGETYRGPEVQRGEDGRRKFIDVTYHEGNVSKEWSRDFSWSTEIQIMNWKHFGNRSFRPNQREVINATMSGRDCFVLMPTGGGKSLTYQVPAACNSGVTLVVSPLVSLIRDQIMHLEEANIPAAYLSANLTWEETLAVLNGISEPDPRYRLLYVTPEKIARSNSLFSTLEQLYRRDMLSRIVIDEAHCVSQWGHDFRPDYQGLRVLKEKFPKTPVLALTATASMTVKEDVVQVLGLRNCVLFRQSFNRPNLRYEVRQKTKKCFEEIDKFIRANYQNECGIIYCLSRNDCEKSAEILRNMGHKAAFYHANMDPAERDRVQQQWSRDEVYIICATIAFGMGINKPDVRFVIHHSLPKSIEGYHQESGRAGRDGQSATCILYYSYGDYIRLKHMLTAEQERSYGNKSFSEGSTAQVATNLENLLRMVSYCENDVDCRRTMQLAYFGETFDASSCKKTCDNCSKNVTYTEEDITNVAKDIVTLVLQTKERHTLQHLLDIFRGSQNAQIKKFKHDCLELHGVGKKYQKTEAERILRRLVCENVLREEVSKSDAYGSVFSVLKVNSAKAADLENGKLKVFIKLPVKKGELSTPTLKKPINSPAASSRQSLGGSPLPTDTPVNTMAAPPTPVNQALSAKVYNALAQLRTEIVNTSEGKPGKGLMPYHIFQNAEMRSISLKLPKTMEELAEINGFGKVKCNKYGERILQVVRRISSEESESRESEFVSPGKRPRTSLPDDGQRPISTPRPMSTPRTVSTPRSRNTSVPVSNGAKAGPHILSSGVNGAASFDVGSEADDFEFDFDDSYANSSASVGKRMRTDSSSGVEPARRSGSNLSGSDNRGAKAFPPPPPVPAFSAPGNRQSEGVTASAAGGEKRFSNGVFSAGSNTLRANGGGWASRQSSAAGAQGQSQATVTSPTSESWNGFAFTKKGTG
Length1508
PositionUnknown
OrganismChara braunii (Braun's stonewort)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Charophyceae> Charales> Characeae> Chara.
Aromaticity0.07
Grand average of hydropathy-0.601
Instability index50.87
Isoelectric point8.58
Molecular weight162749.01
Publications
PubMed=30007417

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22071
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.06|      14|      15|    1147|    1160|       1
---------------------------------------------------------------------------
 1147- 1160 (23.55/16.32)	DLENGKLKVFIKLP
 1165- 1178 (24.50/17.30)	ELSTPTLKKPINSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     400.42|     130|     142|     766|     907|       2
---------------------------------------------------------------------------
  623-  762 (200.50/124.02)	STEIQIMNWKHfgnrSFRPNQR..EVINATMSGRDCFVLMPTGGG..KSLTYQVPAACNSgVTLVVS...P.LVSLIRDQIMH.LEEANipaAYLSANltWEETLAVLNGISEPD..PRYRLLYVTPEKIARSNSLFSTLEQLYRRDMLSR
  766-  906 (199.92/162.81)	DEAHCVSQWGH....DFRPDYQglRVLKEKFPKTPVLALTATASMtvKEDVVQVLGLRNC.VLFRQSfnrPnLRYEVRQKTKKcFEEID...KFIRAN..YQNECGIIYCLSRNDceKSAEILRNMGHKAAFYHANMDPAERDRVQQQWSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     378.16|      75|     127|     120|     194|       3
---------------------------------------------------------------------------
   13-   60 (55.08/17.76)	...............................................................GS.........RDDKDGSLPH.NNLDSEMQWLTEHANTS.EGL...EHGF......VYSlPHERP..D.......AE
   61-  174 (109.80/43.00)	QGQQcpPGQE.PFKF.RWP..LPPGTpsgkdvlerlrmiqsshctfvqpgtslpvkkgtsfakGT.........RLGKTSSGGS.FNHDSGSTVVTPMGPPSGPGL...VQNG......GFS.QRQQP..AGSSVSGMAS
  175-  256 (94.99/36.17)	QGMM..TGQM.GAAT.RHD..AGGGV.......................................dggggktftSFGGGDGGCP.RPSNGGGTSSAP.G..SGTGFsvpFQ.S......SFI.GR.APggVGGGVRVVAD
  257-  324 (86.70/32.35)	ASQS..SGDYrGAGPgSNDlrTGGPC...................................eaG............G.TQSDGM.HRH.SGS...MSWGVQGGIG.......G......G.S.RETNA..SGNDVDLMDD
  486-  529 (31.59/ 6.92)	..........................................................................RNGPWSSNGPiRGEESGGVGRVAGGVGTG.GN...VPGGsswqsqGFS..................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.21|      11|      14|     555|     566|       4
---------------------------------------------------------------------------
  555-  566 (21.77/11.46)	FPPPtPPSSGYG
  572-  582 (20.89/ 6.68)	FAGP.AGRPDYG
 1421- 1430 (20.56/ 6.45)	FPPP.PPVPAF.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.88|      23|     147|    1190|    1215|       7
---------------------------------------------------------------------------
 1190- 1212 (43.46/24.12)	PLPTDTPVNTMAAPPTPVNQALS
 1318- 1340 (39.42/15.11)	PISTPRPMSTPRTVSTPRSRNTS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22071 with Med34 domain of Kingdom Viridiplantae
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