<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP22051

Description F-box-like/WD repeat-containing protein TBL1X
SequenceMSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEVAQQHPPKNGEATVNGEENGAHAINNHSKPMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERGVCTHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length464
PositionTail
OrganismUrsus maritimus (Polar bear) (Thalarctos maritimus)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Carnivora> Caniformia> Ursidae> Ursus.
Aromaticity0.08
Grand average of hydropathy-0.337
Instability index36.63
Isoelectric point5.57
Molecular weight50586.80
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP22051
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     372.50|      40|      40|     272|     311|       1
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  115-  144 (34.18/14.29)	..............LRGHESE...........VFICAWNPVS.........dlL.ASGS.GDSTAR
  163-  200 (42.91/19.58)	HCirEGGHDVP..S....NKD...........VTSLDWNSDG.........tlL.ATGS.YDGFAR
  201-  230 (31.31/12.56)	I...WTEDGNLASTLGQHKGP...........IFALKWNKKG..........nY............
  231-  282 (45.43/21.10)	IL..SAGVDKTTIIWDAHTGEakqqfpfhsapALDVDWQNNT..........tF.ASCS.TDMCIH
  283-  324 (62.78/31.61)	VC..RLGCDRPVKTFQGHTNE...........VNAIKWDPSG.........mlL.ASCS.DDMTLK
  325-  375 (58.67/29.12)	IW..SMKQDTCVHDLQAHSKE...........IYTIKWSPTGpatsnpnsnimL.ASAS.FDSTVR
  379-  417 (51.18/24.59)	VE..RGVC...THTLTKHQEP...........VYSVAFSPDG..........kYlASGS.FDKCVH
  418-  459 (46.05/21.48)	IW..NTQSGSLVHSYRG.TGG...........IFEVCWNARG........dkvG.ASASdGSVCV.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP22051 with Med16 domain of Kingdom Metazoa
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