<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21990

Description F-box-like/WD repeat-containing protein TBL1X isoform X3
SequenceMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTAFASCSTDMCIHVCRLGSDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDVERGFCIHTLTKHQEPVYSVAFSPDGKHLASGSFDKCVHIWNTQSGSLVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length366
PositionTail
OrganismBalaenoptera acutorostrata scammoni (North Pacific minke whale) (Balaenoptera davidsoni)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Artiodactyla> Whippomorpha> Cetacea> Mysticeti> Balaenopteridae> Balaenoptera.
Aromaticity0.08
Grand average of hydropathy-0.335
Instability index31.17
Isoelectric point5.80
Molecular weight39931.15
Publications









Function






Annotated function


ECO:0000256	RuleBase:RU365082

GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP21990
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     386.71|      40|      40|     174|     213|       1
---------------------------------------------------------------------------
   11-   50 (41.78/18.45)	..PNKatVLRGHESE...........VFICAWNPVS.........dlLASGS.GDSTARIWNL..
   73-  107 (45.74/20.79)	DVP....S....NKD...........VTSLDWNSDG.........tlLATGS.YDGFARI.WTED
  108-  138 (37.38/15.84)	GNLAS..TLGQHKGP...........IFALKWNKKG..........nY...........ILSAGV
  139-  190 (45.56/20.68)	DKTTI..IWDAHTGEakqqfpfhsapALDVDWQNN..........taFASCS.TDMCIHVCRLGS
  191-  232 (62.52/30.72)	DRPVK..TFQGHTNE...........VNAIKWDPSG.........mlLASCS.DDMTLKIWSMKQ
  233-  283 (57.02/27.47)	DTCVH..DLQAHSKE...........IYTIKWSPTGpatsnpnssimLASAS.FDSTVRLWDVER
  284-  325 (63.02/31.02)	GFCIH..TLTKHQEP...........VYSVAFSPDG.........khLASGS.FDKCVHIWNTQS
  326-  361 (33.68/13.65)	GSLVH..SYRG.TGG...........IFEVCWNARG........dkvGASASdGSVCV.......
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21990 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




1) ARIWNL
2) IYTIKW
45
246
50
251