<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21990

Description F-box-like/WD repeat-containing protein TBL1X isoform X3
SequenceMEIDGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTAFASCSTDMCIHVCRLGSDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDVERGFCIHTLTKHQEPVYSVAFSPDGKHLASGSFDKCVHIWNTQSGSLVHSYRGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
Length366
PositionTail
OrganismBalaenoptera acutorostrata scammoni (North Pacific minke whale) (Balaenoptera davidsoni)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Laurasiatheria> Artiodactyla> Whippomorpha> Cetacea> Mysticeti> Balaenopteridae> Balaenoptera.
Aromaticity0.08
Grand average of hydropathy-0.335
Instability index31.17
Isoelectric point5.80
Molecular weight39931.15
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21990
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     386.71|      40|      40|     174|     213|       1
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   11-   50 (41.78/18.45)	..PNKatVLRGHESE...........VFICAWNPVS.........dlLASGS.GDSTARIWNL..
   73-  107 (45.74/20.79)	DVP....S....NKD...........VTSLDWNSDG.........tlLATGS.YDGFARI.WTED
  108-  138 (37.38/15.84)	GNLAS..TLGQHKGP...........IFALKWNKKG..........nY...........ILSAGV
  139-  190 (45.56/20.68)	DKTTI..IWDAHTGEakqqfpfhsapALDVDWQNN..........taFASCS.TDMCIHVCRLGS
  191-  232 (62.52/30.72)	DRPVK..TFQGHTNE...........VNAIKWDPSG.........mlLASCS.DDMTLKIWSMKQ
  233-  283 (57.02/27.47)	DTCVH..DLQAHSKE...........IYTIKWSPTGpatsnpnssimLASAS.FDSTVRLWDVER
  284-  325 (63.02/31.02)	GFCIH..TLTKHQEP...........VYSVAFSPDG.........khLASGS.FDKCVHIWNTQS
  326-  361 (33.68/13.65)	GSLVH..SYRG.TGG...........IFEVCWNARG........dkvGASASdGSVCV.......
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21990 with Med16 domain of Kingdom Metazoa
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