<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21963

Description Cyclin-like protein
SequenceMAANFWTSTHGTNWLLSRQALADCRKIDREYVNEKDLIKVNIWFAQIITDLGRSLQVRQVIIATAITYFKRFYTKNSFRNTEPNLVAATCMYLACKIEESPQHIKAIITDMKNIMQERGEHFTYDNQKVAEMEFYLLEELDFNMIVYHPYRSLMTLAQDLGTKNEDVQWAWYVINDSYRTDICLLYPPHVVAAAALYLRIALRGGAQYGDYSLTSTTSTANDNSVAGVTTRGAKRGAAAAAINNNTNTNANETPKVKDIRLWFAQLNVDLEHISDIVQEIISLYFLWGEEDKQNEKIREILTRLLK
Length306
PositionKinase
OrganismRhizophagus sp. MUCL 43196
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Glomeromycotina> Glomeromycetes> Glomerales> Glomeraceae> Rhizophagus.
Aromaticity0.10
Grand average of hydropathy-0.269
Instability index33.96
Isoelectric point6.11
Molecular weight35170.64
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21963
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.03|      28|     167|      76|     138|       1
---------------------------------------------------------------------------
   76-  103 (51.86/75.56)	NSFRNT.....EPNLVAATCMYLACKIEESPQH
  176-  208 (43.16/11.64)	DSYRTDicllyPPHVVAAAALYLRIALRGGAQY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.91|      34|     216|      33|      69|       2
---------------------------------------------------------------------------
   33-   69 (54.65/47.46)	NEKDLIK.VNIWFAQIITDLGRSLQVRQVIIAtaiTYF
  251-  285 (56.25/40.38)	NETPKVKdIRLWFAQLNVDLEHISDIVQEIIS...LYF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21963 with CycC domain of Kingdom Fungi
Unable to open file!