<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21954

Description Putative mediator of RNA polymerase II transcription subunit 26b (Fragment)
SequenceDQGGSDDHDHVNENLSLIGFALNFRIWGCCLLGMRMKSRSLDEWRSYFGSANSDIFEIIDHAILVAALDCPKEFRGRRDGIAERLFSSRLTRCVECDRVELALAGDAKEDEGGFDTDVACKDTKVNGLGEVGVNLASNYSFREAEALTDEIEEESQYVGEVLRIRDILLNPQDQSESVLFDSLRRLQLMELSVDCLKATEIGKVVNRFRKRGSKGICQLARTLISGWKEMVDEWVKVTATTAIADSEGGTPDSVNPSVVDDDEEEEEGLPSPPMDDAFFATQPVSMELSQFSLLDVASLDNVKFFDGMDDDGNPRPSGQFNRNRENGRKPALDSQVIERRKLQASPETAIITREVKSQKAKKNEAPVKLNKPVTADSGPGQPSKSNMKRKSNMEPKMQQKIDNNSIARRPPIGQLNKHTLSDDAAVQVKLEATKRKLQESYQQAENAKRQRTIQVMEINELPKQAVRRNAHFKPGYHNRNWANNARR
Length487
PositionUnknown
OrganismMucuna pruriens (Velvet bean) (Dolichos pruriens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Mucuna.
Aromaticity0.06
Grand average of hydropathy-0.696
Instability index48.77
Isoelectric point5.51
Molecular weight54600.65
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21954
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     165.51|      43|      43|     366|     408|       2
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  308-  354 (56.70/35.93)	MDDDGNPR...PSgQFNRNRENGRKPALDSQVIERRKLQASPEtaiITRE
  355-  400 (62.98/40.73)	VKSQKAKKneaPV.KLNKPVTADSGPGQPSKSNMKRKSNMEPK...MQQK
  401-  443 (45.84/27.63)	IDNNSIAR.rpPIgQLNKHTLSDDAAVQVKLEATKRK..LQES...YQQ.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21954 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FFDGMDDDGNPRPSGQFNRNRENGRKPALDSQVIERRKLQASPETAIITREVKSQKAKKNEAPVKLNKPVTADSGPGQPSKSNMKRKSNMEPKMQQKIDNNSIARRPPIGQLNKHTLSDDAAVQVKLEATKRKLQESYQQAENAKRQRTIQVMEINELPKQAVRRNAHFKPGYHNRNWANNARR
2) TAIADSEGGTPDSVNPSVVDDDEEEEEGLPSPPMDDAFFAT
304
241
487
281










Molecular Recognition Features






MoRF SequenceStartStop




1) FKPGYHNRNW
472
481