<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21939

Description U-box domain-containing protein 52 (Fragment)
SequenceMVVDAEGTNVFPPDEEDIANIFNPLRQMCRANVVKLKEAVIDDSDVVKGIVEYAQRNGINTIVIGAPHPCKNSLARTLTLRSGSKKFKGKGVSTGVMKSAPDYSSVYVISKEKIVGARPAVRPMIIESPKEDGVRCHTIKLISNFQIPICHAHENRTQSQRRGSTNGRSERSTQLEMTRCSSAGQSMDHRSRFSHSSAESDSSGSHKFGSKNGTKQECDSSFASDSHFSVEMEAEMKRLRLKLKQTMEMYNSACKEAISAQNKAREINQWKQKNEERIAEEARMSKEAAITLAENEKVRAKCAMEAAEDAMKMAEKEAKRRFHAEMKARREAQEKDRALNQLACKEIRIRKYTINDIEEATHRFSPSLKIGEGGYGPVFKGQLDHTPVAIKILNPEASHGRRQFQQEVEVLCSIRHPNMVILLGACPEYGCLVYEYLDNGSLEDRLLRKNDSPPIPWWKRFEIAAEIGTALLFLHQTKPEPIVHRDLKPGNILLDKNFVSKISDVGLARLVPPSVADSVTQYHLTAAAGTFCYIDPEYQQSGMLTTKSDIYSLGIVLLQIITVKPPMGLAHHVQKAIENGTFSDMLDPVVTDWPLEEALAFAKLSLSCAELSKRDRPDLATVIVPELNRLRDFGFASLNLQNRFSFPRPPTPPRSPLSNT
Length660
PositionTail
OrganismMucuna pruriens (Velvet bean) (Dolichos pruriens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Mucuna.
Aromaticity0.06
Grand average of hydropathy-0.475
Instability index45.92
Isoelectric point8.74
Molecular weight73759.49
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21939
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     101.62|      27|      79|     301|     327|       1
---------------------------------------------------------------------------
  217-  237 (34.07/19.08)	EC..DSSFASDSHFSVE..MEA......EMK
  253-  281 (21.10/ 9.29)	ACkeAISAQNKAREINQwkQKNEERIAEE..
  301-  327 (46.45/28.41)	KC..AMEAAEDAMKMAE..KEAKRRFHAEMK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.15|      46|      49|     488|     536|       2
---------------------------------------------------------------------------
  488-  536 (74.62/77.05)	KPGNILLDKnfvSKISDVGLARLVPPSVADSV.TQYHLTAA..AGTFC.YIDP
  539-  588 (66.53/57.92)	QQSGMLTTK...SDIYSLGIVLLQIITVKPPMgLAHHVQKAieNGTFSdMLDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.87|      16|      49|     152|     167|       4
---------------------------------------------------------------------------
  152-  167 (29.18/19.05)	AHENRTQ.SQRRGSTNG
  170-  184 (15.00/ 6.25)	..ERSTQlEMTRCSSAG
  198-  213 (26.70/16.81)	AESDSSG.SHKFGSKNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     125.89|      33|      51|     366|     398|       5
---------------------------------------------------------------------------
  366-  398 (56.23/33.22)	PSLK.......IGEGG...YGPVFKGQLDHTPVAIKILNPEAS
  417-  452 (47.71/27.24)	PNMV.......ILLGAcpeYGCLVYEYLDNGSLEDRLLRKNDS
  453-  482 (21.94/ 9.15)	PPIPwwkrfeiAAEIG...TALLFLHQTKPEPI..........
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21939 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AHENRTQSQRRGSTNGRSERSTQLEMTRCSSAGQSMDHRSRFSHSSAESDSSGSHKFGSKNGTKQECDSSFASDSH
2) QNKAREINQWKQKNEERIAEEARMSKEAAI
152
261
227
290










Molecular Recognition Features






MoRF SequenceStartStop




NANANA