<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21933

Description ATP-dependent DNA helicase Q-like 4A (Fragment)
SequenceMRVLYNLEERSFSATPTSLSYDYYNLSSQSLFLGEAKSTKGVKCDDKIPQVNWSHHVNAHENFSFQAKFLSSNFLFSVPPKKPCHEEQNPGIAGFVVRRSENIQGSQRVQVEKAWIALSSLQNSSRNYVQPGKTVEVTPLLREDRRTTSFQGGYENNERRCPDATTTPIVINHSSLGLDGLVNNHPKYTGQINETLKCMADDIGDDDILENIDVDQIVENYQSTCTPKPSISKFPPITPTADKDNFARQRDNVLPPELCLDCIHGYKLGLCPEAASHLQELKDNLIAISNELLDNGENLNSTQIAKLRQDRSQLNKQIQLLEKYIHSGNLNEERKKSHFSASTAPPTSFMYETPQQTVLCNGPTRDGTQAYMGSGTYGSSFQCLPSFSVDKYGMSSTPVEREAFIPKIIEVNYIEGSGDKRWSSRDFPWTKELEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRHLDNLHVRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWYSVIPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKSAFYHGSMDPAQRASVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKLMLSQGAIEQSPMTSGYNRSNMTNSGRILETNTENLMRMVSYCENDVDCRRLVQLVHFGEKFNSSTCQKTCDNCLKITSFIEKDVTEIAKQLVELVKLMGQRVSSSHVLEVYRGSLSQMVKKHRHETVSLHGAGKRLAKGEASRILHHLVVEDFLVEEVKKSDFYGSVSSILKVNEPKVRNLFAGQRIILRFPSSSVKASKPGKSDPTPAKGSLTSGKLNVTLIGTPAQPQTELDLTNLLQDLSAKLYTALRMLRTSLVREAGEGVMAYHIFGNATLQQISKRVPRTKEELLDINGISKTKVSKYGDRLLETIENTINEYYNLDKSSSKGSADSTKRRRETNGDPDANAEDDYDYDYDYAFTKSTGRSKKRTVKRQNRKAEIYSSAEEDYFHGCPDEDLDFDIIEIEAIDQVTCRNAAGRVLPQWTSS
Length1206
PositionUnknown
OrganismMucuna pruriens (Velvet bean) (Dolichos pruriens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Mucuna.
Aromaticity0.08
Grand average of hydropathy-0.492
Instability index45.89
Isoelectric point7.01
Molecular weight135787.17
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21933
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     297.71|      92|     156|       6|     103|       1
---------------------------------------------------------------------------
    6-  103 (150.67/121.37)	NLEERSFSATPTSLSYDYYNLSSQSLFLGEAKST....KGVKC.DDKIPQVNWSHHVNAHENF.SFQAKFLSSNFLFSVPPKKPCHEEQNpgiagFvVRRSENI
  156-  253 (147.04/102.03)	NNERRCPDATTTPIVINHSSLGLDGLVNNHPKYTgqinETLKCmADDIGDDDILENIDVDQIVeNYQSTCTPKPSISKFPPITPTADKDN.....F.ARQRDNV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.82|      43|     200|     614|     662|       2
---------------------------------------------------------------------------
  614-  662 (63.98/54.31)	SVKEDVVQALGLVNCIIFRQSFNRpnlwySVIPKT.KKCLEdIDKFIREN
  819-  862 (73.83/44.68)	SYCENDVDCRRLVQLVHFGEKFNS.....STCQKTcDNCLK.ITSFIEKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     115.71|      26|      49|     890|     915|       3
---------------------------------------------------------------------------
  890-  915 (41.62/32.44)	YRGSLSQMVKKHRHETVSLHGAGKRL
  916-  941 (34.93/25.87)	AKGEASRILHHLVVEDFLVEEVKKSD
  942-  966 (39.16/30.02)	FYGSVSSILKVNEPKVRNLF.AGQRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.95|      35|      36|    1096|    1131|       9
---------------------------------------------------------------------------
 1096- 1131 (56.67/46.38)	NEY.YNLDKSSSKgSADSTKRRRETNGDPDANAEDDY
 1133- 1168 (56.29/40.30)	YDYdYAFTKSTGR.SKKRTVKRQNRKAEIYSSAEEDY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.74|      27|     775|     278|     306|      12
---------------------------------------------------------------------------
  278-  306 (38.78/29.01)	LQELKDNLIAISNELLD.NGenLNSTQIAK
 1055- 1082 (39.96/23.56)	LQQISKRVPRTKEELLDiNG..ISKTKVSK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21933 with Med34 domain of Kingdom Viridiplantae
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