<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21928

Description Pre-mRNA-processing protein 40C (Fragment)
SequenceMASPAWLSQEAQPPVSGETPPPMASSAPAIPSTGIQITPSRFLYAFNSSNVMSTESTQATPHEKLFNATAHVAPAPPFSYGVLQNVNASASSQQSSTHPAIKSNSNSAVNPMVVQPPVPGVSSHAAPLFSYSIPQSGATFSSNQQHAQSNTNMSDSVAHDVSKLSSASSIPHSVPAHSSTSIMPPPPDPNFRPATSWMPTALSFPLHPIMPTPGNPGPPGLASSAIISSNPAAPSTGTDSSPAALLRPNIPTSAIASDPTAPPKGLPYPSMPAMAAPPQGLWLQPPQMSGVLRPPYLQYPAPFPGPFPFPARGVALPAVPIPDSQPPGVTPVGAAGGTSTPSASSHQLRGTTALQIEVIPGPADDKKKSNAVDTQNEDAANNDQLDAWTAHKTEAGIVYYYNAVTGESTYDKPAGFKGEPHQVSAQPTPVSMMDLPGTDWLLVSTSDGKKYYYNNLTKTSCWQIPNEVAELKKKQDGDVTKDHLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSLQSSSSALDLIKKKLQDSGTPVASSSIPTPSVQTGSESNGSKTVESTTKGLQVDNNKDKQKDTNGDANVSDTSSDSEDEDSGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKRLLDEASEDINHNTDYQTFRKKWGYDPRFEALDRKEQEHLLNERVLPLKKAAEEKAQATRAAAATSFKSMLKEQGDISFNSRWSRVKESLRDDPRYKSVRHEDREVLFNEYISELKAAERAAERETKAKREEQDKLRERERELRKRKEREEQEMERVRLKIQRKEAVTSFQALLVEIIKDPLASWTESKPKLEKDPQGRASNPDLDASDTEKLFREHVKMLQERCAHEFRVLLAEVLTSDAASQETEDGKTVLNSWSTAKRLLKSDLRYNKVPRKEREALWRRYAEDMLRRQKTSHDSREEKHTDAKARNSLESSKLSLESGRSHGRR
Length1010
PositionUnknown
OrganismMucuna pruriens (Velvet bean) (Dolichos pruriens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Mucuna.
Aromaticity0.06
Grand average of hydropathy-0.753
Instability index55.12
Isoelectric point8.04
Molecular weight110606.26
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21928
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     635.84|     102|     104|     119|     220|       1
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   13-  107 (95.01/39.78)	............................PPVSGETPPPMASSapaIPST.........GIQIT.PSRfLYAFNSSNvMST................ESTQATPH....EKLFNAT.....AH.....VAPAP..PfsYGVLQNV...NAS...A.SSQQ...S.STHP...AIKSNSNS
  109-  216 (166.62/75.38)	VNPM..................vvqppvPGVSSHAAPLFSYS...IPQS.........GATFS.SNQ.QHAQSNTN.MSDSVAH.......DVSKLSSASSIPH....SVPAHSS.....TS.....IMPPP..P..DPNFRPA...TSW...M.PTAL...SFPLHP...IMPTPGNP
  217-  304 (107.14/45.81)	GPPG..................lassaiIS.SNPAA..........PST.........G.TDS.SPA.ALLRPNIP.TS.AIAS.......D......PTAPPK....GLP.YPS.............MPAM..A..AP...PQ...GLW...LqPPQM...SGVLRPpylQYPAP.FP
  305-  395 (80.15/32.39)	GPFP.....................fpaRGVALPAVPI........................................PDSQPP.......GVTPVGAAGGT......STPSASShqlrgTTalqieVIPGP..A..DDKKKSNavdTQN...E.DAAN...NDQLDA...WTAHKTEA
  396-  540 (92.21/38.39)	G...ivyyynavtgestydkpagfkgepHQVSAQPTPVSMMD...LPGTdwllvstsdGKKYY.YNN.LTKTSCWQ.IPNEVAElkkkqdgDVTK.DHLMSVPNtnvlSDRGSGM.....VT.....LNAPA..I..NTGGRDA...AAL...K.PSSLqssSSALDL...IKKKLQDS
  541-  646 (94.72/39.63)	GTP.................vasssiptPSVQTGSESNGSKT...VEST.........TKGLQvDNN.KDKQKDTN..GDA..........NVSDTSSDSEDED....SGPSKEE.....CI.....IQFKEmlK..ERGVAPF...SKWekeL.PKIV...FDPRFK...AIP.....
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     320.75|      64|      64|     668|     731|       2
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  648-  691 (55.22/40.98)	......................YSAR.........RSLFEHY...VKTRAEEER..........K...EK.RAAQ..............................KAAIEGFKRLLDEASED
  692-  758 (94.51/77.10)	INHNTDYQTFRKKWG.......YDPRFEA....LDRKEQEHL...LNERVLPLK..........KaaeEKaQATR..............................AAAATSFKSMLKE.QGD
  759-  862 (73.77/58.04)	ISFNSRWSRVKESLR.......DDPRYKS....VRHEDREVL...FNEYISELKaaeraaeretK...AK.REEQdklrererelrkrkereeqemervrlkiqrKEAVTSFQALLVEIIKD
  863-  927 (64.46/49.47)	..PLASWTESKPKLE.......KDPQGRAsnpdLDASDTEKL...FREHVKMLQ......ercaH...EF.RVLL..............................AEVLTS.....DAASQE
  928-  990 (32.79/20.36)	...TEDGKTVLNSWStakrllkSDLRYNK....VPRKEREALwrrYAEDMLRRQ...ktshdsrE...EK.HTDA..............................KA...............
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21928 with Med35 domain of Kingdom Viridiplantae
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