<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21925

Description U-box domain-containing protein 33 (Fragment)
SequenceMAVVSPMPTTPQRINSVNSLRDIGVPGIMTNRREIVNEPSLSRVNDTIYVAVAKDVKDSKLNLIWAIQNSGGRRICILHVHVPTPMIPLMGAKFPASALSEQEVQAHHERERLNMHKTMDAYLLICQRMGVRAGKLLIEMDCIEKGIVELISYYGIKKLIMGAASDKYHSRRMTTLRSKKAIYVCEQAPAPCHIQFICNGYLIHTRDCSLDRGNVEQMAKSEVGRSPHLRSQSVTLGQNHWVKLTSPAQELFRRVRTINDGHRRSPASVSSSEGFLTPQRKFGREVSSDELDGPSRWSPSVFSMCCNSGLIEPVLTPNLISDGSENVLDLNLNGLSPISEDLHHSSPPRVLDGEMENALYDQLEQAMAEAANAKRDAYKEIIRREKAEKDAIDAMRRAKATENLYKEELKLRKELEEAAKKANEELDNMKSQTDKVNEELRLALDQKSSLENQIASTELMLKELEQKIVSAEDLLQNYKDEQDDLQMQHDKALKEAEELRRKQGEASSTHDLQRFSEFSIPEIKEATRNFNPSLKIGEGGYGSIFNGILRHTEVAIKTLKPGSKQGPVEFQQEVEVLSKLRHPNLITLIGACPESWTLVYEFLPNGSLEDRLNCKDSSPPLSWQTRIRIAAELCSALIFLHSSKPHSIAHGDLKPSNILLDANLVSKLSDFGICRVLSCQESPSNDTTQFWRTVPKGTLLYVDPEFLTSGELTPKSDVYSFGIILLRLVTGKPALGITKEVQYALDTGKLKSILDPLAGEWPFMLAEQLTRLALRCCEMNRRSRPDLYPDVWKILEPMRASLRDTNTFQLGSQGLCQPPPYFICPIFLEVMQDPHVAADGFTYEAKAIREWLESGHDISPRTNSKLVHRNLVPNHSLRHAIQDWLQSH
Length888
PositionTail
OrganismMucuna pruriens (Velvet bean) (Dolichos pruriens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Mucuna.
Aromaticity0.06
Grand average of hydropathy-0.422
Instability index47.84
Isoelectric point6.54
Molecular weight99984.21
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21925
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     225.63|      70|     280|     273|     348|       1
---------------------------------------------------------------------------
  273-  348 (111.02/93.82)	EGFLtpqRKfgREVSSDELDGPSRWSPSVFSMCCN..SGLIEPVLTpNLISDGSEN...VLDLNLNGLSPISEDLHHSSPP
  546-  620 (114.61/76.08)	NGIL...RH..TEVAIKTLKPGSKQGPVEFQQEVEvlSKLRHPNLI.TLIGACPESwtlVYEFLPNGSLEDRLNCKDSSPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.90|      14|     278|     492|     505|       2
---------------------------------------------------------------------------
  492-  505 (22.76/12.95)	ALKEAEELRR......KQGE
  519-  538 (17.14/ 8.15)	SIPEIKEATRnfnpslKIGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     150.36|      44|      47|     388|     434|       3
---------------------------------------------------------------------------
  356-  383 (26.47/13.41)	......................ENALYDQLEQAmAEAANAKRDAYKEIIR
  388-  434 (65.18/56.12)	E.KDAIDamrRAKATEN.LYKEELKLRKELEEA.AKKANEELDNMKSQTD
  439-  483 (58.72/41.56)	ElRLALD...QKSSLENqIASTELML.KELEQK.IVSAEDLLQNYKDEQD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.77|      27|     625|     185|     235|       5
---------------------------------------------------------------------------
  185-  235 (32.11/66.98)	CEqaPAPchiQFICNGYLihtrdcsldrgnveqmaksEVGRSPHLRSQSVT
  816-  842 (56.65/34.66)	CQ..PPP...YFICPIFL...................EVMQDPHVAADGFT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21925 with Med32 domain of Kingdom Viridiplantae
Unable to open file!