<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21914

Description U-box domain-containing protein 33 (Fragment)
SequenceMELLQPHHAPILRLPFHGVPSSSQPPIPLPKIHVAVGKSLHKSLPLLKWTFNHFRNAEIVILHAYQPSLTIPTLLGKLPASQAGPAVVSAFRRVEREETMKLLDKYLTICRAARVKASIIVTEADQVQKGIVDLVIRHNIQKLVIGAAPENCIKVKRNSSKANYTAKNAPPFCEVWFIYKGKHMWTREASETPCSLSSCTQPEIAATESLRCRSFQYGKNELFDSEYLQPNSARTTIGSGIRSWVQGEIIETEATFSSKASSCSSHCSPLNSSGGCSDTYLEAMEERINEQLVETKREAEAVTDEAFAELLKCKRLEDEAMEAIKKVNLFESAHACEVKLRKEAEDALRATVQEQQKLLNESEEISGELQMTMRNIALLDSHAQEANRRRDEAADELSLIEESISTLWQERQQIRRQKMEALRWLERWRSRGQVGAAAAHCNGFIGFAEELPELAEFSLSDLQNATCNFSNSFKIVQGGYGCIYKGEMLGRTVAIKKFHQHNMQGPLEFRQEVQVLGSLQHPHLITLLGVCPEAWSIVYEYVPNGTLQDYLFRKSNNSPLTWNTRARMIAEIASALCFLHSFKPETIIHGDLKPETVLLDSSLGCKMCGFGFSRLVSEESLLRPSFRLSTEPKGAFTYTDPEFQRTGILTTKSDIYSFGLIILQLLTGRTPVGLAVLVRNAVSCGKLSSILDSSAGEWPSAMVTRLVELGLQCCQQNRRDRPELTPTLVRELEQLHALEERPVPSFFLCPILQEIMHDPQVAADGFTYEGDAIREWLENGHDTSPMTNLKLSHLFLTPNHALRLAIQDWLCKS
Length813
PositionTail
OrganismMucuna pruriens (Velvet bean) (Dolichos pruriens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Mucuna.
Aromaticity0.07
Grand average of hydropathy-0.259
Instability index49.97
Isoelectric point6.35
Molecular weight91229.43
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21914
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.19|      23|     217|       2|      27|       1
---------------------------------------------------------------------------
    2-   27 (39.99/30.58)	ELLQPHHApilRLPF.HGVPSSSQPPI
  226-  249 (38.20/21.18)	EYLQPNSA...RTTIgSGIRSWVQGEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.50|      16|      16|     282|     297|       4
---------------------------------------------------------------------------
  282-  297 (25.63/15.70)	EAMEERINEQLVETKR
  300-  315 (25.86/15.90)	EAVTDEAFAELLKCKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.05|      22|     415|     254|     275|       5
---------------------------------------------------------------------------
  254-  275 (41.12/23.95)	ATFSSKASSCSSHCSPLNSSGG
  675-  696 (36.93/20.84)	AVLVRNAVSCGKLSSILDSSAG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21914 with Med32 domain of Kingdom Viridiplantae
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