<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21912

Description Pre-mRNA-processing protein 40A (Fragment)
SequenceMVSVGDFRPVIQAQQGQPFVPMNSQQFGPAGHAIPSSNVGMPVIQGQQLQYSQPMQQLTPRPMHPGHPAPSSQTIPMPYIQTNRPLTSIPPHSQQTVPPLSNHMPGLPVSGAAPHSSYTFTPSYGQQQDNANALAQYQHPPQMLAPPSGQPWPSSASQSVAAVTSVQPAGVQPSGTTSTDPATTATNQQSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPVERADASTVWKEFTSSEGRKYYYNKITQQSTWSIPEELKLAREQAQKGVNQGMQSETSETSNAVVSSAATSTAVNAVSLNTSLTSNGTSNGLASSPSSVTPIAATDSQQLVSGLSGTSVSHSVVTSSTAGVEPSTVVTTSAAPTVVAGSSGLVDNSPQQSKLPPIVDNQASQDFASVNGSSVQDIEEAKRGLPVVGKNNVIPPEEKTNDDESLVYANKLEAKNAFKALLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERPRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDYVKVNSHWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQKRIQKDRIRRGERKNRDAFRKLLEEHVAAGILTAKTQWREYCLKVRDLPQYQAVASNTSGSTPKDLFEDVAEDLEKQYHEDKTLIKDTIKSSKITVVTTSVFDEFKVAILEEAVCQTISEINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITTSSKWEDCKPLFEETQEYRSIGDESYSREIFEEYITYLKEKAKEKERKREEEKDSLIDGCHIHSSSSQLVEWSD
Length877
PositionUnknown
OrganismMucuna pruriens (Velvet bean) (Dolichos pruriens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Mucuna.
Aromaticity0.07
Grand average of hydropathy-0.811
Instability index53.27
Isoelectric point5.53
Molecular weight99064.06
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21912
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.14|      37|      38|     194|     231|       1
---------------------------------------------------------------------------
  194-  230 (74.25/45.74)	WQEHTSADGRRYYYNKRTRQSSWEKPLELMSPVERAD
  235-  271 (71.89/39.99)	WKEFTSSEGRKYYYNKITQQSTWSIPEELKLAREQAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     472.57|      64|      66|     461|     524|       2
---------------------------------------------------------------------------
  408-  464 (41.29/23.47)	.....QDIEEAKR..GL..PVVGknnvippEE.KTNDDESLVYANKLE.................AKNAFKALLES...V.nvqSDWT
  465-  532 (93.44/63.04)	WEQAMREIINDKRYNAL..KTLG.......ER.KQAFNEYLGQRKKLEAEERRMKQKR.......AREEFTKMLEE...CkeltSSMR
  533-  600 (86.85/58.04)	WSKAISMFENDERFNAV..ERPR.......DR.EDLFESYMVELERKEKENAAEEHRR.......NIAEYRKFLES...CdyvkVNSH
  601-  673 (74.40/48.59)	WRKIQDRLEDDDRYLRL..EKI........DR.LLVFQDYIRDLEKEEEEQKRIQKDRirrgerkNRDAFRKLLEEhvaA....GILT
  678-  727 (46.39/27.34)	WREYCLKVRDLPQYQAVasNTSG.......STpKDLFEDV...AEDLE........KQ.......YHEDKTLIKD.............
  750-  807 (60.66/38.17)	LEEAVCQTISEINL...................KLIFEELL.ERAKEKEEKEAKKRQR.......LADDFTNLLYT...FkditTSSK
  808-  863 (69.55/44.91)	WEDCKPLFEETQEYRSI..GDES.......YS.REIFEEYITYLK....EKAKEKERK.......REEEKDSLIDG...C........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     146.88|      21|      30|       9|      29|       3
---------------------------------------------------------------------------
    9-   29 (42.43/23.49)	PVIQAQQG.......QPFVPMNSQQFGP
   42-   60 (37.90/20.20)	PVIQGQQL.......QYSQPM..QQLTP
   78-   98 (37.47/19.89)	PYIQTNRP.......LTSIPPHSQQTVP
  122-  146 (29.08/13.80)	PSYGQQQ.dnanalaQYQHPP..QMLAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     164.19|      35|      36|     310|     344|       4
---------------------------------------------------------------------------
  285-  309 (29.55/11.31)	...TSNAV.VSSA..ATSTAVNAV.......SLNTSLT
  310-  344 (57.69/27.70)	SNGTSNGL.ASSP..SSVTPIAATDSQQLVSGLSGTSV
  345-  366 (32.31/12.91)	SHSV...V.TSST..AGVEP......STVVT....TSA
  371-  407 (44.64/20.10)	VAGSS.GLvDNSPqqSKLPPIVDNQASQDFASVNGSSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.18|      11|      37|      31|      41|       5
---------------------------------------------------------------------------
   31-   41 (22.12/11.59)	GHAIPSS.NVGM
   66-   77 (19.05/ 9.06)	GHPAPSSqTIPM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21912 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AVSLNTSLTSNGTSNGLASSPSSVTPIAATDSQQLV
2) HSVVTSSTAGVEPSTVVTTSAAPTVVAGSSGLVDNSPQQSKLPPIVDNQASQD
3) SIPEELKLAREQAQKGVNQGMQSETSETSNAVVSS
4) VIQAQQGQPFVPMNSQQFGPAGHAIPSSNVGMPVIQGQQLQYSQPMQQLTPRPMHPGHPAPSSQTIPMPYIQTNRPLTSIPPHSQQTVPPLSNHMPGLPVSGAAPHSSYTFTPSYGQQQDNANALAQYQHPPQMLAPPSGQPWPSSASQSVAAVTSVQPAGVQPSGTTSTDPATTATNQQSLSDWQEHTSADGRRYYYNKRT
301
346
258
10
336
398
292
211










Molecular Recognition Features






MoRF SequenceStartStop




1) YITYLKEKAKE
837
847