<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21911

Description Pre-mRNA-processing protein 40B (Fragment)
SequenceMGHNPFQSLFMGKSGLKNKSLGGFSAKMSNNPQYPGLQPLRPPIAGSVDPPRNFGPPMPVQFRPVVPTQQSQQFMSMPSQHYQPQPVGPGGVPMIGVGMPPQNQQPQFSQPIQQLPPRPSPQLPPPSQAIPLPVVRPNMHIPSESMMPQPDSQAPNGYGPGLGGPGMPLSSSYTFASSTYGQVQTNFNSTGQFQPVPQIHAITGSSSQSITTGATLQSNGGQPSITTVMHSATNVQPQLAKNGSTDWIEHTSATGRKFYYNKKSKVSSWEKPFELMTPIERVDASTNWKEYTSPDGRKYYYNKVTRESKWSIPEELKVSIIDNNAVSNILPLAREQVEKAIVSGTCPEAVLNSHSQPSPTPSVTEATPNADNLSLTSQGEPSSPVSVAPVVTTSISNLQSELPSGLSTSPSATPITGPKVDELEAPVNTVTPSDTNVGSDKAVVTDINTVRTPMKDTNNDSAQDTLGSADGVPAEDKEDGKNDLIGEKNNDMAAETKAVEPESLVYANKMEAKDAFKALLESVNVGSDWTWDRAMRLIINDKKYGALKTLGERKQAFNEYLNQRKKQEAEEKRTKQKKAREDFKKMLEESTDLTSSTRWSKAVSIFENDERFKAVDRDRDRRDMFESFLEELSNKERARVQEERKRNIMEYRKFLESCDFIKASTQWRKVQDRLEADERCARLEKIDRLEIFQDYLRDLEKEEEEQKKIQKEELRKTERKNRDEFRKLMEEHIASGILTAKTHWRDYYTKVKDLHAYIAVAANTSGSTPKDLYEDVAEELEKQYHEEKSRIKDAVKLAKDITVSSKWEDCRPLVEDSQEF
Length820
PositionUnknown
OrganismMucuna pruriens (Velvet bean) (Dolichos pruriens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Mucuna.
Aromaticity0.07
Grand average of hydropathy-0.831
Instability index56.31
Isoelectric point5.97
Molecular weight91725.64
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21911
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     214.96|      38|      39|     242|     279|       1
---------------------------------------------------------------------------
  156-  202 (41.46/20.77)	NGygpglggpgmplSSSYTFASSTYGQvQTNFNSTGQF....QPVPQIHAI
  203-  228 (39.58/19.50)	TG............SS...SQSITTGA.TLQ.......SNGGQP..SITTV
  242-  279 (69.86/39.96)	NG............STDWIEHTSATGR.KFYYNKKSKVSSWEKPFELMTPI
  283-  320 (64.06/36.04)	DA............STNWKEYTSPDGR.KYYYNKVTRESKWSIPEELKVSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     407.19|      66|      66|     576|     641|       2
---------------------------------------------------------------------------
  474-  545 (73.57/51.02)	AEDKEDG...KNDLIGEKNNDMAA.........ETKA.VEpeslvyaNKmEAKDAFKALL.E...SVNVGSDWTWDRAMRLIINDKKYG
  546-  613 (91.14/65.12)	ALKTLGE...RKQAFNEYLNQRKK.........QEAEEKR.....tkQK.KAREDFKKMLEE...STDLTSSTRWSKAVSIFENDERFK
  614-  681 (91.77/65.62)	AVDRDRD...RRDMFESFLEELSN.........KERARVQ.....eeRK.RNIMEYRKFLES...CDFIKASTQWRKVQDRLEADERCA
  682-  758 (81.63/57.49)	RLEK.ID...RLEIFQDYLRDLEKeeeeqkkiqKEELRKT.......ER.KNRDEFRKLMEEhiaSGILTAKTHWRDYYTKVKDLHAYI
  759-  820 (69.09/47.44)	AVAANTSgstPKDLYEDVAEEL............EK.QYH.......EE.KSR..IKDAVKL...AKDITVSSKWEDCRPLVEDSQEF.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.24|      19|      19|     100|     118|       3
---------------------------------------------------------------------------
   50-   77 (21.53/ 6.17)	PPRNFGPpmpvQF.RPVvptqqsQQFMSM
   78-   94 (32.16/12.93)	PSQHYQP....QPVGPG......G..VPM
  100-  118 (41.55/18.90)	PPQNQQP....QFSQPI......QQLPPR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.41|      16|      19|     427|     442|       4
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  404-  420 (18.79/ 7.99)	SGlSTSPSATPITGPKV
  427-  442 (28.62/16.13)	VN.TVTPSDTNVGSDKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.07|      20|      23|     342|     363|       5
---------------------------------------------------------------------------
  344-  363 (38.29/23.02)	GTCPEA...VLNSHSQPSPTPSV
  365-  387 (29.78/10.83)	EATPNAdnlSLTSQGEPSSPVSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      67.81|      13|      15|     121|     133|       7
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  121-  133 (26.36/11.78)	PQLPPPSQA.IPLP
  137-  150 (22.40/ 8.95)	PNMHIPSESmMPQP
  160-  168 (19.05/ 6.55)	PGLGGPG.....MP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.83|      19|      24|       1|      22|       8
---------------------------------------------------------------------------
    1-   22 (26.95/21.70)	MGHNPfQslFMGKSGLKNKSLG
   28-   46 (37.88/19.15)	MSNNP.Q..YPGLQPLRPPIAG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21911 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KNKSLGGFSAKMSNNPQYPGLQPLRPPIAGSVDPPRNFGPPMPVQFRPVVPTQQSQQFMSMPSQHYQPQPVGPGGVPMIGVGMPPQNQQPQFSQPIQQLPPRPSPQLPPPSQAIPLPVVRPNMHIPSESMMPQPDSQAPNGYGPGLGGPGMPLSS
2) QTNFNSTGQFQPVPQIHAITGSSSQSITTGATLQSNGGQPSITTVMHSATNVQPQLAKNGSTDW
3) SGTCPEAVLNSHSQPSPTPSVTEATPNADNLSLTSQGEPSSPVSVAPVVTTSISNLQSELPSGLSTSPSATPITGPKVDELEAPVNTVTPSDTNVGSDKAVVTDINTVRTPMKDTNNDSAQDTLGSADGVPAEDKEDGKNDLIGEKNNDMAAETKAVEPESLV
17
184
343
171
247
505










Molecular Recognition Features






MoRF SequenceStartStop




1) GRKFYYNKK
2) GRKYYYNK
255
296
263
303