<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21906

Description Mediator of RNA polymerase II transcription subunit 16 (Fragment)
SequenceMNQIAATKSPEEGSQKKNEAVSGEEEDPMEQESLTPATVFCIRLRQPKSNLLYKMSVPEICRNFSAVSWCGKLNAIACASETCARIPSSTGNPPFWIPIHIVIPERPTECAVFNVIAVALYAFTDSPRDSVQFIEWSPTCCPRALLIANFHGRVTIWTQPSQFVTDFLSIQGPANLVVDTSCWLREHEWQQDIAVITKWLSGVSLYRWLSSKPSPPNSRSTFEEKFLSQQRQTSVSSKELCCIIRHSCHDDTCNGRETLATQLHNCMLTVVMVATVAMPEIRTCLTHGVVMISARWPNFLCVCSVFSSGSVQLHWSQWPPQNATPPKWFCTSKGPLGCGPSGIMAGDVIITDSGAMHVAGVPIVNPSTIVVWEVMPGPGNGFQVTPRTSINNGVPLSLSSPNWTGFAPLAAYLFSWQDYLLSEEKQGKNQTNQNLGDSIPLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTCGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQHVVLHPIFGNPTSSMGGQHPMQTVWQTKVELSIPPTSDFKNHQTPAVGMNTDMHKVSEFGFDKSKRVSFDPFDLPSDVRTLARIVYSAHGGEIAIAFLRGGVHIFSGPNFAPIDNYQISVGSAIAAPAFSSTSCCSASVWHDTSKDQTILKIIRVLPPSIPTSQVKTNSSNWECAIAERFWWSLLVGVNWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSAEHRQQYCPSLDRIKCRLLEGANAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQVSGETLSSIDPEAVAVEPALVPCVQAYVDSVLDLASHFITRLKRYASFCRTLASHAVTGNNRNMVASPAQSSATPATSQGGQNGTTSSSGSTQMQAWVHGAIAKISSTTDTVSNPAPNPPISGPLSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRYVGGVQRTADSNTQKPQPNASAPGKMEEISKPVSTVVRPDDGQAGRVSQPVPASKGGEEPSPGRSRIGTGNAGQGYTFEEVKVLFLVLMDLCRRTAGLQHPLPVSQVGSNNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWPDPDDLDSVNDMPKLVSLNPLDSSSLENCDVYYGANGLWPRKRRVSERDAAFGLNTSVGLGAYLGIMGSRRDVVTALWKTGLDGIWYKCIRCLRHTCAFASPASSNLPSQNDREIWWISRWAYGCPMCGGTWVRVV
Length1290
PositionTail
OrganismMucuna pruriens (Velvet bean) (Dolichos pruriens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Mucuna.
Aromaticity0.08
Grand average of hydropathy-0.128
Instability index45.99
Isoelectric point6.29
Molecular weight140478.11
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21906
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     189.28|      60|     286|     742|     831|       1
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  319-  388 (99.00/44.59)	PpqNATPPKWFCTSKGPLGCG.PSGIMAGDV..IITDSGA.....MHVAGV..PIVNPSTIVvwevmPGPgngFQVTPRT
  742-  811 (90.29/87.10)	P..SAEHRQQYCPSLDRIKCRlLEGANAQEVraMVLDMQArllldMLGKGIesALINPSALV.....PDP...WQVSGET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     208.13|      49|     171|     436|     484|       2
---------------------------------------------------------------------------
  436-  484 (86.01/50.07)	GDSIPLHC..SPVSNFSAYVSPEAAAQSAATTTWGSGVTA...VAFDPT..CGGSV
  545-  590 (57.11/30.64)	QTKVELSI..PPTSDFKNHQTPAVGMNTDMHKVSEFGFDKskrVSFDP........
  609-  658 (65.01/35.95)	GGEIAIAFlrGGVHIFS...GPNFAPIDNYQISVGSAIAA...PAFSSTscCSASV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     312.06|      98|     112|     820|     923|       3
---------------------------------------------------------------------------
  820-  923 (147.90/94.57)	VAVEPALVPCVQAyVDSVLDlaSHFITRLKRYASFC....RTLASHAVTGNNRNmvASPAQSSATPATSQGGQNGTTSSSGSTQMQAwVHGAIAKIS...STTDTVSNPAP
  936- 1040 (164.16/85.89)	ISINTGTFPGTPA.VRLIGD..CHFLHRLCQLLLFCfffrRTQLPRYVGGVQRT..ADSNTQKPQPNASAPGKMEEISKPVSTVVRP.DDGQAGRVSqpvPASKGGEEPSP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.67|      20|     169|      78|     118|       4
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   78-   97 (41.21/47.87)	CASETCA.......RIPSSTGNPPFWI
 1246- 1272 (35.46/ 8.12)	CLRHTCAfaspassNLPSQNDREIWWI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21906 with Med16 domain of Kingdom Viridiplantae
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