<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21895

Description Putative mediator of RNA polymerase II transcription subunit 26b (Fragment)
SequenceMNKESLDYWRNYFGAANSDIFGIIDHAIMVAASDCPKEFRLRRDGIAERLFSCRLSQCLGCERVELAVPVDNDGGEGGGGCKSGFDGDGTKFEFEAGASKESKVNSTRNDPGEMNMNQVSNYSYGDAEALTDEIEEESQYAEEVFRIKDVLLNFEDESDSVLFDSLRRLQLMELTVDLLKATEIGKAVNPLRKHASKDICQLARTLIDGWKEMVDEWVKATTAITGSEGTPDSVNPSVVDDEEGLPSPPMDEGALFAAPTGSMELSQFFDGMDDDGNPHHSGGFIKNHEHGRIPSLNSQNIAKRKPQASNEANIIAKDSKSQQAKKNETAVRQNKPVNADSGPGRPPNSTMQKKGNIELKIHQNIVKNAIPKNPHVGQLDKFKGSDNSAVHVKLEATKRKLQERYQQVENAKRQRTVQVMELHDLPKQGSGHRNPHVKPGNHKRQWGHEALEFSSEDHALGV
Length462
PositionUnknown
OrganismMucuna pruriens (Velvet bean) (Dolichos pruriens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Mucuna.
Aromaticity0.06
Grand average of hydropathy-0.777
Instability index40.19
Isoelectric point5.54
Molecular weight51089.26
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21895
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.54|      17|      39|      72|      88|       1
---------------------------------------------------------------------------
   72-   88 (34.26/23.06)	NDGGEGGGGCKSGFD.GD
  109-  126 (29.28/18.53)	NDPGEMNMNQVSNYSyGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.58|      27|      40|     304|     340|       2
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  304-  337 (35.59/34.86)	RKPQAS..NEANI...IakdskSQQAKKNetAVRQNKPV
  345-  376 (40.00/16.47)	RPPNSTmqKKGNIelkI.....HQNIVKN..AIPKNPHV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.71|      23|      44|     378|     400|       3
---------------------------------------------------------------------------
  378-  400 (38.65/21.96)	QLDKFK................GSDNSAVHVKLEATKRK
  407-  445 (33.06/17.86)	QVENAKrqrtvqvmelhdlpkqGSGHRNPHVKPGNHKRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.43|      20|      45|     228|     247|       5
---------------------------------------------------------------------------
  228-  247 (36.67/21.94)	EGTPDSVNP.....SVVDDEEG.LPS
  270-  295 (29.76/16.47)	DGMDDDGNPhhsggFIKNHEHGrIPS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21895 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSQFFDGMDDDGNPHHSGGFIKNHEHGRIPSLNSQNIAKRKPQASNEANIIAKDSKSQQAKKNETAVRQNKPVNADSGPGRPPNSTMQKKGNIELKIHQNIVKNAIPKNPHVGQLDKFKGSDNSAVHVKLEATKRKLQERYQQVENAKRQRTVQVMELHDLPKQGSGHRNPHVKPGNHKRQWGHEALEFS
2) TTAITGSEGTPDSVNPSVVDDEEGLPSPPMDEGALFAAP
265
221
454
259










Molecular Recognition Features






MoRF SequenceStartStop




1) GHEALEF
447
453