<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21894

Description Mediator of RNA polymerase II transcription subunit 19a (Fragment)
SequenceMILKPKADICWDSGDYCYRQTMKITGLLVLEISSVGCGHRIISSFGHLGTILLESRLNCLALVAVFLGAALIAPSTVRSYLDADYLGNSDQSVPCVFLSKTSLGHMLFELLGPRELTGAVDLLNHFKLLPHFEFFCKRPLPVSISDAHYLHNVVGDREIRKGDGMQLDQLIQNTSLSSGANYRIQPLDLDVLQEAFQLKETVPIDLPAAEKGILTVAGKSKGESKDEEKKHKKHKDRDKGKDKEHRKHKHRQKDRSKDKEKDKKKDKSRHCDSSADPSKKHHEKKRKHDGDDDLNDVHKHKKIKHKSSKIDELGAIK
Length317
PositionHead
OrganismMucuna pruriens (Velvet bean) (Dolichos pruriens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Mucuna.
Aromaticity0.05
Grand average of hydropathy-0.668
Instability index31.75
Isoelectric point9.15
Molecular weight35731.62
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21894
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      82.29|      15|      15|     229|     243|       1
---------------------------------------------------------------------------
  220-  237 (20.37/ 6.65)	SKGESK.deeKKHKKHKDR
  238-  253 (21.14/ 7.16)	DKGKDK..ehRKHK.HRQK
  272-  287 (19.84/ 6.30)	DSSADP...sKKHHEKKRK
  288-  306 (20.95/ 7.04)	HDGDDDlndvHKHKKIKHK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.99|      20|      21|      33|      53|       4
---------------------------------------------------------------------------
   34-   53 (35.65/22.49)	SVGCGHRIISSFGHLGTILL
   56-   72 (23.71/10.18)	RLNC.LALVAVF..LGAALI
   92-  111 (32.63/18.09)	SVPCVFLSKTSLGHMLFELL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21894 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEKGILTVAGKSKGESKDEEKKHKKHKDRDKGKDKEHRKHKHRQKDRSKDKEKDKKKDKSRHCDSSADPSKKHHEKKRKHDGDDDLNDVHKHKKIKHKSSKIDELGAIK
209
317










Molecular Recognition Features






MoRF SequenceStartStop




1) KDEEKKHKKHKDRDKGKDKEHRKHKHRQKDRSKDKEKDKKKDKSRHCDSSADPSKKHHEKKRKHDGDDDLNDVHKHKKIKHKSSKIDELGAIK
225
317