<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21893

Description Mediator of RNA polymerase II transcription subunit 9 (Fragment)
SequenceTQYNYSEMDHYSSPGGSWTMIPTHNSNIQSQSQDPNLFLQQQQFLQPQPFQQALSPQSPFQQHHNLYQQQQQQQQRLLQQQQQQQQQQQQNLHQSLASHYHLLDLVENLAEVIEHGNPDQQSDGLINELSSHFDKCQQLLNSISGSISTKAMTVEGQKKKLEESEQLLNQRRELIANYRKSVEELVRSEP
Length190
PositionMiddle
OrganismMucuna pruriens (Velvet bean) (Dolichos pruriens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Mucuna.
Aromaticity0.06
Grand average of hydropathy-1.117
Instability index91.28
Isoelectric point5.50
Molecular weight22130.98
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21893
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.76|      33|      37|      29|      64|       1
---------------------------------------------------------------------------
   29-   64 (54.72/28.72)	QSQSQDPNLFLQQQQflQPQPFQQALSpQSPFQQHH
   69-  101 (62.04/24.27)	QQQQQQQRLLQQQQQ..QQQQQQQNLH.QSLASHYH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.34|      10|      27|     132|     141|       2
---------------------------------------------------------------------------
  132-  141 (19.41/12.97)	HFDKCQQLLN
  160-  169 (15.94/ 9.32)	KLEESEQLLN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21893 with Med9 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QPFQQALSPQSPFQQHHNLYQQQQQQQQRLLQQQQQQQQQQQQNLHQ
2) TQYNYSEMDHYSSPGGSWTMIPTHNSNIQSQSQDPNLFLQQQ
48
1
94
42










Molecular Recognition Features






MoRF SequenceStartStop




1) SWTMIPTHN
2) YNYSEMDHY
17
3
25
11