<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21887

Description Mediator of RNA polymerase II transcription subunit 25 (Fragment)
SequenceMPHIVLSNGPSLTAHETSRRRLKQIDEKSSAGRKNINSCTFVLFVGVHPSREVGLVIYNANSDLGLDVQFMNWTTNVDHFLGTLSGLAFNGDNLNNHTMVEGLAEALVMFPRPPNGMTLQEYYKSERHCILVATGEPVARRMLVSVPMVEGGNFVGTQVKPLNANFLEVARMFGPLAVTLSIITPKQHPMFAEIFKVGNPNNDSLMVNTPITDHGPFTVLLSRKFKESHRVLYKKETADSASKGSVEPMRTTIDDTFFLNFINNHEEDLFLVDSPIMGEQTIEGVQNVIPEHILVEEPVIPRIAADENMGMTVPPAIQHAAADENIPVNMPLIMPPSAEDENLPMNVFDDIMAELCNEGDIFPPRKKAKITFAPILEEDSLRDHSQPDPPIPILTLGNRSNSGLSLPQNNPNIWHQPSGGNSTVVRLGTGNSMFPNQLQSGSSPSFPMLPPRGGSCSHNPLQRHRPYEMNGLTPLGIPLGTNYMNMMHQYNQSQFWPRPPPLNDIHNYVHAWEGCLVGKIHLNRSSLNQAKALRIPTSPATLTVQWSSRLEIALFLPKRAVNHTMKICGGPIHFMFFHLTQFNNLDLYDHLMNKSLVSPITIYCVKFSHKKILSVCYWCAKIELPSQALILSTTESKHHYLGMVFPG
Length647
PositionUnknown
OrganismMucuna pruriens (Velvet bean) (Dolichos pruriens)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Mucuna.
Aromaticity0.07
Grand average of hydropathy-0.207
Instability index48.38
Isoelectric point6.45
Molecular weight72055.01
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21887
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     601.86|     144|     383|      84|     230|       1
---------------------------------------------------------------------------
   84-  230 (237.84/136.56)	LSGLAFNGDNL..NNHTMVEGLAEALVMFPRPPNGMTLQEYYKSERHCILVATGE.PVARRMLVSVPMVEGGNF..VGTQVKPLNANF...LEVARMFGP.LAV..TLSI...ITPKQ.HPMFAEIFKVGNPN.NDSLMVNTPITDHGPFTVlLSRKFkeSHR
  346-  467 (162.86/85.01)	.........NV..FDDIMAELCNEGDIFPPRKKAKITFAPILEEDS...LRDHSQ.PDP.....PIPILTLGNRsnSGLSLPQNNPNI...WHQPSGGNS.TVV..RLGTgnsMFPNQlQSGSSPSFPMLPPR.GGSCSHN.PLQRHRPY.............
  469-  610 (201.16/107.61)	MNGLTPLGIPLgtNYMNMMHQYNQSQ.FWPRPPPLNDIHNYVHAWEGCLV...GKiHLNRSSLNQAKALR......IPTSPATLTVQWssrLEIA.LFLPkRAVnhTMKI...CGGPI.HFMFFHLTQFNNLDlYDHLMNKSLVS...PITI.YCVKF..SHK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      75.51|      15|      15|     300|     314|       2
---------------------------------------------------------------------------
  300-  314 (28.72/17.76)	IPRIAADENMGMTVP
  317-  331 (28.09/17.21)	IQHAAADENIPVNMP
  334-  345 (18.70/ 8.90)	MPPSAEDENLPM...
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21887 with Med25 domain of Kingdom Viridiplantae
Unable to open file!