<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21884
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MHERNLSLAAKGKAKESVQWQLGWWDLSHSLEGTKRPAQWSKSSVIYTAHESEPQVLGRHFPSAQQFYLPNPPLPYPIEADPPTVLSLCPSDDWLFAYFPGKSGEGFGCIWHKEAQLDDWQVKECWTYPVGGGIVTAAWSYPHREWVVTDEGTSMRLPTLGPLAPVGTPLLLLVTESHQLLVFTVSTQTKPQQLGRTSLLQHFTPDTEPIGKIGGDKICVKAAIGLCYQDSVILVAMRSKLLPSQGAAQALQNAVDLGLSMDLSQSQPVDSPFSHEWELWGEEPTISVCEVRIEYKPGIKPVLNRPLPPIYNPGSLVDMVFYCPPPPRSAGPSSSGSGKPDSKTSASNVRTLHLAATFFDSDDYTSLPKSEIVSYTFLAPGNPASYWVLRGEHRRQSHTKVPCFLLPSISRGGLLAGFLDAGGLLPRRKSKSKETTTGAIEVLKLPDLSTHEDWESVPILSHIQAGTIDVPVSAALSPNETLVCGISSPLLGSHQSIQILPRRVSGETSLILTGHLHEDLSRHLVAAIRARYSPSDVIHALAVPTLPTEVTVNTLDKTFTSMEADSFGLMEIWTGELLGVATEVARMRKLERGPEQDLCAARWQTAHEMSSLGACCSAFDTCREGDSYDLDAVWQLLGLTGWVIEFVEKLLKECIFVGERPDEPTTPSLGGFKGTTLDSPIFLHLVHPYSLSRLHTAMEHVKRFHDQVSKLTAKGENSHIAKDYLLDITEGSGIDLQLLGPFLAEILQESKTLNAQDLRRSLASCGPVHSLQPQIRKVINKVLTSKAIDRARLFIKPSDLSDGIARLSLSEPAAPSGTLKDKNVDVVKKSALWRNKAASVCTRCGGRSEVAVGVQTGTDKTLSRWQTWEKAWQLRCVCGGLWCSTVYS |
Length | 888 |
Position | Tail |
Organism | Polyporus brumalis |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes>
Polyporales> Polyporaceae> Polyporus.
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Aromaticity | 0.07 |
Grand average of hydropathy | -0.183 |
Instability index | 48.14 |
Isoelectric point | 6.33 |
Molecular weight | 97308.96 |
Publications | PubMed=30061923
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Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
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GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP21884
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 1031.92| 257| 259| 359| 616| 1
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28- 121 (37.41/12.90) ..........................................................................................................................................................SH.SLEGTKR.........PAQwSKSSVIYTAHESE.pqvLGRH....................FPSA...........QQF..YLPN........PPL..PYPIEAD..PPTvlslcpsddwlfayFPGKSGEGFGC..IWHKE........AQLDDWQ.............................
123- 356 (274.13/144.57) ............KECWTYP.VGGGivtaawsYPHREWVVTDE...GTSMRLPT.LG......PLA.PVGtPLLLLVTESHQLLVfTVSTQTKPQQLGRTS.LLQ......HFTPDTEPI.GKI.GGDKICVKAAIGLCYQDSVIlVAMRSKLLPSQGAAQALQN.........AVD.LGLSM........D...LSQSqpvdspfshewelwgeeptiSVCEV..........RIE..YKPG.IKPVLNRPLP..PIYNP.....................................GSLVDMVFYCPPPPR.SAGPS..SSGSGKpdSKTSASNVRTLHLAA
359- 616 (421.49/229.68) FDS.DDYTSLPKSEIVSYTFLAPG.......NPASYWVLRGEHRRQSHTKVPCFLL......PSI.SRG.GLLAGFLDAGGLLP.RRKSKSKETTTGAIE.VLKLPDLSTHEDWESVPIlSHI.QAGTIDVPVSAALSPNETLV.CGISSPLLGSHQSIQILPR.........RVS.GETSLILTGHLHED...LSRH....................LVAAI..........RAR..YSPSDVIHALAVPTL..PTEVTVNTLDKT..............FTSMEADSFGLMEIWTGELLGVATEVARMRKLERGPE..QDLCAA..RWQTAHEMSSLGACC
619- 878 (298.89/158.31) FDTcREGDSYDLDAV..WQLLG...........LTGWVIEFVEKLLKE....CIFVgerpdePTTpSLG.GFKGTTLDSPIFLH.LVHPYSLSRLHTAMEhVKRFHDQVSKLTAKGEN..SHIaKDYLLDITEGS...........GIDLQLLGPFLA.EILQEsktlnaqdlR.....RSLASCGPVH.S...LQPQ....................IRKVInkvltskaidRARlfIKPSDLSDGIARLSLsePAAPSGTLKDK...................NVDVVKKSALWRNKAASVCTRCGGRSEVAVGVQtgTDKTLS..RWQTWEKAWQLRCVC
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