<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21869

Description Cyclin-like protein (Fragment)
SequenceAVAHSKRWIVDRATLRQARSDDVLYLDDPDLLRFLNIFFANLISKLGKKLSLRQRVIATATVFFRRFYVKNSYCETDPFIVIAACCYVAAKAEESPVHIKNVVSEARMLFGEEYGIKSFPSDNSKLAEMEFYLVDELECDLTVFHPYRTLMTLCGKEGGGSLPAAEAGEADADDTDGPRYWGTGEGKLELQEGALQMAWFIINDTYRSELCLLYPPHLIAIAAIYLTLVFHAPTRAAIQHAQAQAQPHASTSTSASHSHSHSHGQSHSPTRRSSRSAKKPHPQAHAQPQDIVGFMAGLNVSMPLVATVAQEIIALYALWDRYSEDPGVESARAALLQRTRKGRAGRAEAQVQEAEGATAAATGAVTPMFLVQVLLGMREQRMADMAHPASGRPVVVNKMLERTQAAG
Length407
PositionKinase
OrganismPolyporus brumalis
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Polyporales> Polyporaceae> Polyporus.
Aromaticity0.08
Grand average of hydropathy-0.169
Instability index43.01
Isoelectric point6.78
Molecular weight44724.44
Publications
PubMed=30061923

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21869
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.37|      16|      16|     231|     246|       1
---------------------------------------------------------------------------
  231-  246 (29.07/17.01)	HAPTR.....AAIQHAQAQAQ
  248-  263 (26.56/14.95)	HASTS.....TSASHSHSHSH
  267-  287 (25.74/14.27)	HSPTRrssrsAKKPHPQAHAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.10|      16|      16|      99|     114|       2
---------------------------------------------------------------------------
   99-  114 (27.38/19.01)	IKNVVSEARMLFGEE.Y
  116-  132 (23.72/15.60)	IKSFPSDNSKLAEMEfY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.04|      18|     176|     167|     184|       3
---------------------------------------------------------------------------
  167-  184 (32.02/19.07)	AGEADA..DDTDGPRYWGTG
  185-  199 (18.23/ 7.90)	EGKLEL..QEGALQMAW...
  344-  363 (23.79/12.40)	AGRAEAqvQEAEGATAAATG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21869 with CycC domain of Kingdom Fungi
Unable to open file!