<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP21859

Description Uncharacterized protein
SequenceMSYIREPPSANTVPRDAPRRSQPPFPGPKLSLSWSAMQIHYYEYVRSGGNRPAAALAPGAPVLASCVQIKNNLAVVSSFSGGGGTRKRITKVRRQPAEPADPRTSTQQYLTKRPTGPTGHRQPDVGFRPGVLASGIAFPGSPSTILISRSGQISAVSILSLTKSTLHSQILIMGIIATNKHALYSGLLISGRGSQRREKCPGAMSMPSALGLEPWGPLVSPVLAAPKLAPGTRGVFAVPRQDDGPNASECKCLCQRLVSGSRMAETGVGSPLRLTNTTPEHEQKHQLASTQYPAPSDKQQVASIKAGSVPDSILCYLSPAAYPVTVYRLPVADRGDRAAIFPIPRYTGVLTTPPQASVAERRPNATQRNTGPRNAAPRADDATQLAQHPDRIASHRITNPFCGFNTSSTSISCPPEGLDPPTSKLQADDRPVPSHPMAPAALTQEDFKALEQTRQRLYQLTNNIASLKADVGRSNPLPQWSAPSPRSPIPSPHPRRSLPDTDHAMLSYIGRLSRPRRLSWIVVYPATNYPGRTQEALLGQLLRKKLEPSVESWVEEARAIQTGAGEPVKNEDDEELWGWAADWVLQRMAEYIHSEIPDNFTAEERAAGVDNVNTGLKRKLDKKKPKTIQEEEDDDDDEDEDEDEDEEMENTRADFMTDQAISGLGQVGFGTGPVRKNPNGRPWTEDDILKFATSGAAVKPQADETDYYADNT
Length712
PositionHead
OrganismPhialophora cf. hyalina BP 5553
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes> Helotiales> Pleuroascaceae> Venustampulla.
Aromaticity0.06
Grand average of hydropathy-0.603
Instability index51.97
Isoelectric point8.27
Molecular weight77380.00
Publications
PubMed=30018880

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP21859
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     547.21|     132|     135|     234|     365|       1
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   96-  228 (162.40/81.35)	......PAEPADPRTSTQQYLTKRPTgpT........GHRQPDVGF.RPGVLASgiAFPG..SPSTILISrSGQISAVS....ILSLTKSTLHS.QILIMGIIATNKHA..LYSgLLISGRGsQRREKCPgamsMPSALGLEPWGPLVSPVLAA..PKL
  234-  365 (224.71/115.53)	GVF.AVPRQDDGPNASECKCLCQRLV..S........GSRMAETGVGSPLRLTN..TTPE..HEQKHQLA.STQYPAPSDKQQVASIKAGSVPD.SILCYLSPAAYPVT..VYR.LPVADRG.DRAAIFP....IPRYTGVLTTPPQASVAERR..PNA
  371-  500 (160.10/80.09)	GPRnAAPRADD...ATQLAQHPDRIA..ShritnpfcGFNTSSTSISCP.........PEglDPPTSKLQ.ADDRPVPSHPMAPAAL...TQEDfKALEQTRQRLYQLTnnIAS.LK.ADVG..RSN..P....LPQWSAPSPRSPIPSPHPRRslPD.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP21859 with Med8 domain of Kingdom Fungi
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