Description | Mediator of RNA polymerase II transcription subunit 4 |
Sequence | MDEMIDHRFERVEKALAALINSISTYNPSPTLANDLVAADAGLNEGLEQLSTHQSNYAKILSLRANSQELDGQIRDTLTLLTTTRSALVSVASTSFPDTTNPISYSELLSYARRISKFTLPSTYREPEARPGSADAGYATNANTPKESKSETQTNGSTTPVGVTNGVDMDTQMTVGTAMDIDNGNGNGTPAAGAQQTSQATNATSSTALPNEFSQWLNPAADLPFTPWPSEETIRRGALASLQILMDKGIDPATFDPEKSAELEAERKRIMEEEDRLREEEKTRIEEERRREMERRASISAGLGEERREERREEKPSVFQLETFDDDDED |
Length | 330 |
Position | Middle |
Organism | Phialophora cf. hyalina BP 5553 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Leotiomycetes> Helotiales> Pleuroascaceae> Venustampulla. |
Aromaticity | 0.05 |
Grand average of hydropathy | -0.781 |
Instability index | 49.47 |
Isoelectric point | 4.55 |
Molecular weight | 36387.42 |
Publications | PubMed=30018880 |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364141 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP21853 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 86.46| 25| 28| 155| 182| 1 --------------------------------------------------------------------------- 155- 179 (44.52/33.79) NGSTTPVGVTNGVDMDTQMTVGTAM 185- 209 (41.93/22.88) NGNGTPAAGAQQTSQATNATSSTAL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 60.34| 12| 15| 285| 296| 2 --------------------------------------------------------------------------- 263- 274 (19.50/ 9.91) LEAERKRIMEEE 285- 296 (23.01/12.89) IEEERRREMERR 303- 312 (17.83/ 8.50) LGEERREE..RR --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 72.93| 23| 28| 40| 62| 3 --------------------------------------------------------------------------- 40- 62 (37.57/22.24) DAGLNEGLEQLSTHQSNYAKILS 71- 93 (35.35/20.58) DGQIRDTLTLLTTTRSALVSVAS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 45.16| 13| 30| 217| 232| 4 --------------------------------------------------------------------------- 217- 232 (21.78/20.41) LNPAAdlpFTPWPSEE 250- 262 (23.37/12.35) IDPAT...FDPEKSAE --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) ISYSELLSY 2) REERREEKPSVFQLETFDDDDED | 103 308 | 111 330 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab